Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J5D20_RS03765 Genome accession   NZ_CP071984
Coordinates   815318..816838 (-) Length   506 a.a.
NCBI ID   WP_209526550.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5114     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 810318..821838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D20_RS08150 - 811595..811720 (-) 126 WP_274610351.1 hypothetical protein -
  J5D20_RS03755 (J5D20_03755) - 811873..813189 (-) 1317 WP_209528347.1 restriction endonuclease subunit S -
  J5D20_RS03760 (J5D20_03760) - 813233..815293 (-) 2061 WP_209528350.1 heavy metal translocating P-type ATPase -
  J5D20_RS03765 (J5D20_03765) comM 815318..816838 (-) 1521 WP_209526550.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J5D20_RS03770 (J5D20_03770) def 816844..817368 (-) 525 WP_001185854.1 peptide deformylase -
  J5D20_RS03775 (J5D20_03775) clpP 817373..817960 (-) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  J5D20_RS03780 (J5D20_03780) tig 817981..819336 (-) 1356 WP_209528352.1 trigger factor -
  J5D20_RS03785 (J5D20_03785) - 819449..820285 (-) 837 WP_209528355.1 outer membrane protein -
  J5D20_RS03790 (J5D20_03790) hpaA 820307..821089 (-) 783 WP_077645662.1 flagellar sheath lipoprotein HpaA -
  J5D20_RS03795 (J5D20_03795) moaC 821208..821684 (-) 477 WP_001131514.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57188.18 Da        Isoelectric Point: 8.5420

>NTDB_id=480289 J5D20_RS03765 WP_209526550.1 815318..816838(-) (comM) [Helicobacter pylori strain MT5114]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLVALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKVIVPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKNTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNTEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=480289 J5D20_RS03765 WP_209526550.1 815318..816838(-) (comM) [Helicobacter pylori strain MT5114]
ATGATCAACACGATATTTTGTGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAGTCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCTAAAG
TCATTGTGCCTAAGGCGAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTACGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGTGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGCGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCCTTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCCCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCCGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTAGAAGCCTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATTTCAAGAGTGCATAGCAAGATTGAATACGACAC
CTCTTTTTTATTCGTAGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCCACCAAAGCATGCCGTTGCCAAG
ACAGAGAGATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAAACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAACGAAGAGCAGATAGAACGATTTTGCCCTTTAAATACTGAAG
CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

96.838

100

0.968
  comM Legionella pneumophila str. Paris

36.863

100

0.372
  comM Legionella pneumophila strain ERS1305867

36.863

100

0.372
  comM Acinetobacter baylyi ADP1

36.008

100

0.364