Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   IBL27_RS08640 Genome accession   NZ_CP061071
Coordinates   1777735..1778787 (-) Length   350 a.a.
NCBI ID   WP_002267833.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772735..1783787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS08625 (IBL27_08625) gshAB 1773172..1775493 (+) 2322 WP_002308712.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  IBL27_RS08630 (IBL27_08630) - 1775570..1776172 (-) 603 WP_002279522.1 nitroreductase family protein -
  IBL27_RS08635 (IBL27_08635) amiF 1776816..1777742 (-) 927 WP_002280001.1 ABC transporter ATP-binding protein Regulator
  IBL27_RS08640 (IBL27_08640) oppD 1777735..1778787 (-) 1053 WP_002267833.1 ABC transporter ATP-binding protein Regulator
  IBL27_RS08645 (IBL27_08645) - 1778797..1779828 (-) 1032 WP_002308715.1 ABC transporter permease -
  IBL27_RS08650 (IBL27_08650) - 1779839..1780753 (-) 915 WP_002262739.1 ABC transporter permease -
  IBL27_RS08655 (IBL27_08655) - 1780859..1782508 (-) 1650 WP_002267000.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 39132.65 Da        Isoelectric Point: 5.7541

>NTDB_id=480272 IBL27_RS08640 WP_002267833.1 1777735..1778787(-) (oppD) [Streptococcus mutans B04Sm5]
MSKEKILQVNNLHVNFHTYAGEVKAIRDVSFYLEKGETLAIVGESGSGKSVTTRTLMGLSAKNAEIFGDIEFKGRNLNDL
KEEDWVHIRGNDISMIFQDPMTSLDPTMRIGLQIAEPIIKHEKVTKKEALKRALDMMEKVGIPNAQEHINDYPHQWSGGM
RQRAVIAIALATNPEILIADEPTTALDVTIQAQILHLMKEIQKNTDSSIIFITHDLGVVAGMADRVAVMYAGKIVEYGTV
DEVFYNPQHPYTWGLLNSMPTTNTASGSLHSIPGTPPDLLQPPQGDAFAPRNEFALDIDLKEEPPFFKVSDSHYAATWLL
DDRAPKITPPERILQRWGKWKSLQGEKHND

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=480272 IBL27_RS08640 WP_002267833.1 1777735..1778787(-) (oppD) [Streptococcus mutans B04Sm5]
ATGAGTAAGGAAAAAATTTTACAAGTCAATAATCTCCATGTCAATTTTCATACCTATGCAGGTGAAGTAAAAGCTATTCG
CGATGTTAGTTTTTATTTAGAAAAAGGGGAAACGCTGGCTATTGTTGGCGAATCTGGTTCTGGAAAGTCGGTGACCACAC
GAACTTTAATGGGGTTGTCAGCAAAGAATGCTGAGATTTTCGGAGATATTGAGTTTAAGGGACGCAATCTAAATGATTTG
AAGGAAGAAGACTGGGTTCATATTCGCGGAAATGATATTTCCATGATTTTCCAAGATCCTATGACAAGTTTGGATCCAAC
CATGCGTATTGGCCTTCAAATTGCTGAACCTATTATCAAGCATGAAAAAGTAACTAAAAAAGAAGCTCTTAAGCGGGCTC
TTGACATGATGGAAAAGGTTGGTATTCCCAATGCGCAAGAACACATCAACGATTATCCTCATCAGTGGTCAGGCGGCATG
CGCCAGCGCGCTGTCATAGCTATTGCTTTGGCAACTAATCCTGAAATCCTTATTGCAGATGAACCAACGACGGCTCTTGA
TGTTACCATTCAAGCACAAATTCTTCATTTAATGAAAGAAATCCAAAAGAATACTGACTCTTCCATTATCTTTATCACTC
ATGATTTGGGTGTCGTTGCAGGTATGGCAGACCGTGTTGCTGTTATGTATGCAGGCAAGATTGTGGAATATGGTACAGTA
GATGAGGTTTTCTACAACCCACAGCATCCCTACACTTGGGGGCTTCTCAATTCGATGCCTACAACTAATACAGCTTCAGG
CAGTTTGCATTCAATTCCCGGAACACCGCCTGACTTGTTGCAGCCCCCTCAAGGAGATGCTTTTGCTCCAAGAAATGAAT
TCGCTCTTGATATTGATCTTAAGGAGGAGCCGCCATTTTTTAAAGTTAGTGATTCACATTATGCTGCTACTTGGCTGTTA
GATGATCGTGCTCCTAAGATTACTCCGCCGGAAAGAATTTTGCAGCGTTGGGGAAAATGGAAGAGCTTACAGGGAGAAAA
GCATAATGACTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

99.143

100

0.991
  amiE Streptococcus salivarius strain HSISS4

54.728

99.714

0.546
  amiE Streptococcus thermophilus LMG 18311

54.913

98.857

0.543
  amiE Streptococcus thermophilus LMD-9

54.913

98.857

0.543