Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   IBL27_RS08635 Genome accession   NZ_CP061071
Coordinates   1776816..1777742 (-) Length   308 a.a.
NCBI ID   WP_002280001.1    Uniprot ID   -
Organism   Streptococcus mutans B04Sm5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1771816..1782742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBL27_RS08625 (IBL27_08625) gshAB 1773172..1775493 (+) 2322 WP_002308712.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  IBL27_RS08630 (IBL27_08630) - 1775570..1776172 (-) 603 WP_002279522.1 nitroreductase family protein -
  IBL27_RS08635 (IBL27_08635) amiF 1776816..1777742 (-) 927 WP_002280001.1 ABC transporter ATP-binding protein Regulator
  IBL27_RS08640 (IBL27_08640) oppD 1777735..1778787 (-) 1053 WP_002267833.1 ABC transporter ATP-binding protein Regulator
  IBL27_RS08645 (IBL27_08645) - 1778797..1779828 (-) 1032 WP_002308715.1 ABC transporter permease -
  IBL27_RS08650 (IBL27_08650) - 1779839..1780753 (-) 915 WP_002262739.1 ABC transporter permease -
  IBL27_RS08655 (IBL27_08655) - 1780859..1782508 (-) 1650 WP_002267000.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34858.97 Da        Isoelectric Point: 7.3331

>NTDB_id=480271 IBL27_RS08635 WP_002280001.1 1776816..1777742(-) (amiF) [Streptococcus mutans B04Sm5]
MTENRKKLVEVKNVSLTFNKGKANQVKAIDNVSFDIYEGEVFGLVGESGSGKTTIGRAILKLYNIDKGEIDFEGETISKL
KGKSLFNFRKKAQMIFQDPQASLNSRMKVRDIIAEGLDVHKLVKNKADRDAKVQDLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKIVEIGTSDE
VYHHPIHPYTQSLLSAVPEPDPVLERQRIHKVYDPVDELDGQEREMREITPGHFVLSTEEEAKAYKKK

Nucleotide


Download         Length: 927 bp        

>NTDB_id=480271 IBL27_RS08635 WP_002280001.1 1776816..1777742(-) (amiF) [Streptococcus mutans B04Sm5]
ATGACTGAAAATCGTAAAAAACTAGTTGAAGTCAAAAATGTTTCTTTGACATTCAATAAAGGAAAAGCCAACCAAGTAAA
AGCAATAGATAATGTCAGCTTTGATATCTATGAAGGAGAAGTTTTTGGACTTGTTGGGGAATCTGGCTCAGGTAAGACGA
CAATTGGCCGTGCTATTTTAAAACTTTACAATATTGATAAAGGAGAAATTGATTTCGAAGGTGAAACGATTTCAAAATTA
AAGGGAAAATCATTGTTTAATTTTCGTAAGAAAGCGCAAATGATTTTCCAAGATCCTCAAGCCAGCTTGAATAGTCGCAT
GAAAGTTAGGGATATTATTGCTGAAGGACTTGATGTTCATAAATTGGTTAAAAATAAGGCAGACCGTGACGCAAAAGTTC
AGGATTTACTGGATCTGGTTGGGTTAAATAAGGATCATTTAACACGTTATCCGCATGAATTTTCAGGCGGTCAGCGTCAA
CGGATTGGGATTGCTCGTGCTTTGGCGGTTGAGCCTAAATTCATTATTGCTGATGAGCCCATCTCTGCTTTGGATGTCTC
TATCCAAGCTCAGGTTGTTAATCTCATGCAAAAACTGCAGCATGAACAGGGACTAACGTACCTGTTCATTGCTCATGATT
TATCAATGGTTAAGTATATTTCGGATCGCATTGGTGTGATGCATTGGGGAAAAATTGTGGAAATTGGGACATCTGATGAG
GTTTACCATCACCCCATTCATCCTTATACTCAAAGTCTCTTATCAGCTGTTCCTGAACCCGATCCAGTTTTAGAACGTCA
ACGTATTCATAAAGTTTATGACCCAGTTGATGAGTTAGATGGGCAGGAACGAGAAATGAGAGAAATTACACCGGGGCATT
TTGTTTTATCAACAGAAGAAGAGGCAAAAGCCTATAAGAAAAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

56.066

99.026

0.555
  amiF Streptococcus thermophilus LMG 18311

55.738

99.026

0.552
  amiF Streptococcus salivarius strain HSISS4

55.738

99.026

0.552