Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   J5D21_RS01080 Genome accession   NZ_CP071982
Coordinates   225217..226563 (+) Length   448 a.a.
NCBI ID   WP_209611983.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5135     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 220217..231563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D21_RS01050 (J5D21_01050) - 220291..221145 (+) 855 WP_021171670.1 beta-1,4-N-acetylgalactosamyltransferase -
  J5D21_RS01055 (J5D21_01055) - 221215..221766 (-) 552 WP_000846548.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  J5D21_RS01060 (J5D21_01060) - 221912..222376 (+) 465 WP_031246053.1 helix-turn-helix domain-containing protein -
  J5D21_RS01065 (J5D21_01065) - 222544..223707 (+) 1164 WP_000941654.1 NifS family cysteine desulfurase -
  J5D21_RS01070 (J5D21_01070) - 223729..224709 (+) 981 WP_001051932.1 iron-sulfur cluster assembly scaffold protein NifU -
  J5D21_RS01075 (J5D21_01075) - 224870..225103 (+) 234 WP_000858673.1 ribbon-helix-helix domain-containing protein -
  J5D21_RS01080 (J5D21_01080) radA/sms 225217..226563 (+) 1347 WP_209611983.1 DNA repair protein RadA Machinery gene
  J5D21_RS01085 (J5D21_01085) msrB 226688..227767 (+) 1080 WP_077645060.1 peptide-methionine (R)-S-oxide reductase MsrB -
  J5D21_RS01090 (J5D21_01090) - 228154..228987 (-) 834 WP_000392976.1 sulfite exporter TauE/SafE family protein -
  J5D21_RS01095 (J5D21_01095) hopM 229198..231279 (-) 2082 WP_244965184.1 Hop family outer membrane protein HopM/HopN -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49564.59 Da        Isoelectric Point: 7.8131

>NTDB_id=480236 J5D21_RS01080 WP_209611983.1 225217..226563(+) (radA/sms) [Helicobacter pylori strain MT5135]
MAKKTSLFECQHCGFTSPKWLGKCVQCNAWESFIELNQTQKEVLHALKKPLPQVQKSVSIAEIEHEEVIKFSSTQSELDI
VLGGGVAKGGLYLVGGSPGVGKSTLLLKVASGLAKNQQKVLYVSGEESLSQIKMRATRLDCIEKELYLLNEINWPVIKAN
MESENYFACVIDSIQTLYSPEISSAPGSISQVREITFELMRLAKTRDIAIFIIGHITKEGSIAGPRVLEHMVDSVLYFEG
DPSRELRILRSFKNRFGPTSEIGLFEMKEQGLVSAKEASSLFFSKEEPMEGSAITITLEGSRALILEIQALVSECSFGAP
KRLANGFDTNRLNMLIALLEKKLEIPLNRHDVFINVSGGIKISEPACDLAVIASILSSFKNRKIDNKTAFLGEVSLNGRI
LEAPNLNARLKEMENYGFLKAILPKKPSQKTSIKCYEANVVGKIVEWM

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=480236 J5D21_RS01080 WP_209611983.1 225217..226563(+) (radA/sms) [Helicobacter pylori strain MT5135]
TTGGCTAAAAAAACTTCTTTATTTGAGTGTCAGCATTGCGGTTTTACAAGCCCTAAATGGCTAGGAAAGTGCGTTCAGTG
CAACGCATGGGAGAGCTTTATAGAATTGAACCAAACCCAAAAGGAAGTTTTACACGCGCTTAAAAAACCGCTCCCACAAG
TGCAAAAAAGCGTTTCTATCGCTGAAATTGAACATGAAGAAGTCATCAAGTTTTCTTCCACTCAAAGCGAGTTGGATATT
GTTTTAGGTGGGGGGGTCGCTAAAGGGGGGCTGTATTTAGTGGGGGGGAGTCCTGGGGTGGGGAAATCCACTCTGCTTTT
AAAAGTGGCTTCTGGCTTAGCCAAAAACCAGCAAAAGGTTTTGTATGTGAGCGGGGAAGAGAGCTTGAGCCAGATTAAAA
TGCGTGCCACTAGATTGGATTGCATAGAAAAAGAATTGTATCTGCTCAATGAAATCAATTGGCCTGTGATTAAGGCTAAT
ATGGAGAGCGAAAATTATTTTGCTTGCGTGATTGATTCCATTCAAACGCTTTATTCGCCAGAGATTTCTTCAGCGCCCGG
CTCTATTTCGCAAGTGCGAGAGATCACTTTTGAGCTCATGCGTTTGGCCAAAACAAGAGATATTGCTATTTTTATCATCG
GTCATATCACTAAAGAAGGGAGCATCGCAGGGCCTAGGGTGCTAGAGCATATGGTGGATAGCGTGCTGTATTTTGAGGGC
GATCCCAGTAGGGAATTAAGGATTTTAAGGAGTTTTAAAAACCGCTTTGGCCCTACGAGTGAAATCGGCTTGTTTGAGAT
GAAAGAGCAGGGTTTGGTGAGCGCTAAAGAGGCGTCAAGCTTGTTTTTTTCCAAAGAAGAGCCTATGGAAGGGAGCGCGA
TTACCATCACTTTAGAAGGCTCAAGGGCGTTGATTTTAGAGATTCAGGCGTTGGTGAGCGAGTGCAGTTTTGGAGCGCCC
AAACGATTGGCGAACGGGTTTGACACTAACCGCCTTAACATGCTCATCGCTTTATTGGAAAAAAAGCTAGAAATCCCCTT
AAACCGCCATGATGTGTTCATTAATGTGAGCGGAGGCATTAAGATTAGCGAGCCGGCTTGCGATTTAGCGGTCATTGCCA
GTATCCTTTCAAGCTTTAAAAACAGAAAAATTGACAATAAAACGGCGTTTTTGGGTGAAGTGAGTTTGAATGGCAGGATT
TTAGAAGCCCCTAATTTGAACGCCAGATTGAAAGAAATGGAAAATTACGGCTTTTTAAAAGCCATTTTGCCCAAAAAACC
CAGCCAAAAAACCTCTATCAAATGCTATGAGGCCAATGTGGTGGGTAAGATTGTTGAGTGGATGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(62-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.307

95.313

0.451
  radA Streptococcus mitis SK321

46.948

95.089

0.446
  radA Streptococcus pneumoniae Rx1

46.948

95.089

0.446
  radA Streptococcus pneumoniae D39

46.948

95.089

0.446
  radA Streptococcus pneumoniae R6

46.948

95.089

0.446
  radA Streptococcus pneumoniae TIGR4

46.948

95.089

0.446
  radA Streptococcus mitis NCTC 12261

46.714

95.089

0.444