Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   J5D24_RS03900 Genome accession   NZ_CP071978
Coordinates   836264..837784 (-) Length   506 a.a.
NCBI ID   WP_000611072.1    Uniprot ID   -
Organism   Helicobacter pylori strain MT5125     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 831264..842784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5D24_RS03890 (J5D24_03890) - 832775..834130 (-) 1356 WP_209508196.1 restriction endonuclease subunit S -
  J5D24_RS03895 (J5D24_03895) - 834179..836239 (-) 2061 WP_097707161.1 heavy metal translocating P-type ATPase -
  J5D24_RS03900 (J5D24_03900) comM 836264..837784 (-) 1521 WP_000611072.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  J5D24_RS03905 (J5D24_03905) def 837790..838314 (-) 525 WP_108561398.1 peptide deformylase -
  J5D24_RS03910 (J5D24_03910) clpP 838319..838906 (-) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  J5D24_RS03915 (J5D24_03915) tig 838927..840282 (-) 1356 WP_097707159.1 trigger factor -
  J5D24_RS03920 (J5D24_03920) - 840395..841231 (-) 837 WP_209508198.1 outer membrane protein -
  J5D24_RS03925 (J5D24_03925) hpaA 841260..842042 (-) 783 WP_097707157.1 flagellar sheath lipoprotein HpaA -
  J5D24_RS03930 (J5D24_03930) moaC 842161..842637 (-) 477 WP_097707156.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57175.14 Da        Isoelectric Point: 8.3899

>NTDB_id=480163 J5D24_RS03900 WP_000611072.1 836264..837784(-) (comM) [Helicobacter pylori strain MT5125]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKVIAPKANEELFSLIPNLQCFFVEHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNTEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=480163 J5D24_RS03900 WP_000611072.1 836264..837784(-) (comM) [Helicobacter pylori strain MT5125]
ATGATCAACACGATATTTTGTGCGACCATGCAAAGGGGGGTGGCTGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGCCTGGCTAATAGCTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCCTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTGGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTCTTAGACATTGCCATTAAGCGCCCCCATGCTAAAG
TCATTGCGCCTAAGGCGAATGAAGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAGCTACCTTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTACGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCGGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGCGGGAAAAGCATGATTATTAATCGC
ATGCGTTATATTTTACCCCCCTTAAGCTTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGAAGTTTTAGAAACCCCCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTTTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCACAGCAAGATTGAATACGATAC
CTCTTTTTTATTCGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAGCAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGTCCTTTAAATACTGAAG
CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.431

100

0.974
  comM Acinetobacter baylyi ADP1

36.399

100

0.368
  comM Legionella pneumophila str. Paris

36.382

99.407

0.362
  comM Legionella pneumophila strain ERS1305867

36.382

99.407

0.362