NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	J4T92_RS03750	Genome accession	NZ_CP071975
Coordinates	805199..806719 (-)	Length	506 a.a.
NCBI ID	WP_209553426.1	Uniprot ID	-
Organism	Helicobacter pylori strain MT5118
Function	interact with DprA (predicted from homology) Homologous recombination

Genomic Context

Location: 800199..811719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4T92_RS03735 (J4T92_03735)	hofF	800575..802074 (+)	1500	WP_209553423.1	outer membrane family protein	-
J4T92_RS03740 (J4T92_03740)	-	802477..803073 (-)	597	Protein_743	restriction endonuclease subunit S	-
J4T92_RS03745 (J4T92_03745)	-	803114..805174 (-)	2061	WP_209553425.1	heavy metal translocating P-type ATPase	-
J4T92_RS03750 (J4T92_03750)	comM	805199..806719 (-)	1521	WP_209553426.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
J4T92_RS03755 (J4T92_03755)	def	806725..807249 (-)	525	WP_001185854.1	peptide deformylase	-
J4T92_RS03760 (J4T92_03760)	clpP	807254..807841 (-)	588	WP_000540576.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	-
J4T92_RS03765 (J4T92_03765)	tig	807862..809217 (-)	1356	WP_209553427.1	trigger factor	-
J4T92_RS03770 (J4T92_03770)	-	809329..810165 (-)	837	WP_209553428.1	outer membrane protein	-
J4T92_RS03775 (J4T92_03775)	hpaA	810194..810976 (-)	783	WP_163497955.1	flagellar sheath lipoprotein HpaA	-
J4T92_RS03780 (J4T92_03780)	moaC	811095..811571 (-)	477	WP_001131543.1	cyclic pyranopterin monophosphate synthase MoaC	-

Sequence

Protein

Download Length: 506 a.a. Molecular weight: 57233.22 Da Isoelectric Point: 8.3899

                                >NTDB_id=480084 J4T92_RS03750 WP_209553426.1 805199..806719(-) (comM) [Helicobacter pylori strain MT5118]

MINTIFCTTMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF

DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKVIVPKANEELFSLIPNLQCFFVEHFKE

ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR

MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD

ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE

GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNTEAQKLLEQAVERFNLSMRSVNKVKKVAR

TIADLNACENIEKSHMLKALSFRKIS

Nucleotide

Download Length: 1521 bp

                                >NTDB_id=480084 J4T92_RS03750 WP_209553426.1 805199..806719(-) (comM) [Helicobacter pylori strain MT5118]

ATGATCAACACGATATTTTGCACGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAGGCGACTTTCACAAGGGC

TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA

ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT

GATTTGCCAATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG

GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCTAAAG

TCATTGTGCCTAAGGCGAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA

GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA

CGATAAAGAGTATTATTTTTCAGACGCCTACGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG

CTTTGATCGCTAGTGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGCGGGAAAAGCATGATCATTAATCGC

ATGCGTTATATCTTGCCTCCCTTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG

CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCCCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA

GAGAGCCAAAACCCGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT

ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCAAGAGTGCATAGCAAGATTGAATACGACAC

CTCTTTTTTATTCGTGGGGGCTCAAAACCCTTGCTTATGCGGGAATTTACTCAGCGCCACCAAAGCATGCCGTTGCCAAG

ACAGAGAAATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG

GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTGTTATTAGCTTTCAAACAGCA

AAAGTTAAGGAAGCAGAGCGCTTTTAATGGTAAGCTTAACGAAGAGCAGATCGAACGATTTTGCCCTTTAAATACTGAAG

CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATTTGTCCATGCGCTCTGTCAATAAGGTCAAAAAGGTCGCTAGG

ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGTTGAGTTTTAGAAAGATTTCTTA

A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Helicobacter pylori 26695	97.036	100	0.97
comM	Acinetobacter baylyi ADP1	36.204	100	0.366
comM	Legionella pneumophila str. Paris	36.382	99.407	0.362
comM	Legionella pneumophila strain ERS1305867	36.382	99.407	0.362

Detailed information NTG0480084