Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IAR39_RS11430 Genome accession   NZ_CP061041
Coordinates   2286329..2287204 (+) Length   291 a.a.
NCBI ID   WP_375338525.1    Uniprot ID   -
Organism   Staphylococcus warneri strain WS479     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2281329..2292204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAR39_RS11410 (IAR39_11410) ylqF 2282256..2283131 (+) 876 WP_058709412.1 ribosome biogenesis GTPase YlqF -
  IAR39_RS11415 (IAR39_11415) - 2283124..2283894 (+) 771 WP_187835248.1 ribonuclease HII -
  IAR39_RS11420 (IAR39_11420) sucC 2284002..2285168 (+) 1167 WP_002466034.1 ADP-forming succinate--CoA ligase subunit beta -
  IAR39_RS11425 (IAR39_11425) sucD 2285190..2286095 (+) 906 WP_002466045.1 succinate--CoA ligase subunit alpha -
  IAR39_RS11430 (IAR39_11430) dprA 2286329..2287204 (+) 876 WP_375338525.1 DNA-processing protein DprA Machinery gene
  IAR39_RS11435 (IAR39_11435) topA 2287382..2289457 (+) 2076 WP_026088907.1 type I DNA topoisomerase -
  IAR39_RS11440 (IAR39_11440) trmFO 2289574..2290881 (+) 1308 WP_002466058.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IAR39_RS11445 (IAR39_11445) xerC 2291046..2291939 (+) 894 WP_058709410.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33912.04 Da        Isoelectric Point: 8.7971

>NTDB_id=480018 IAR39_RS11430 WP_375338525.1 2286329..2287204(+) (dprA) [Staphylococcus warneri strain WS479]
MNLNEHFLLKLYWSHFTTSQIHQFYRYHPHIFQMTSNEQETSLLCWITQHHPTLLSKFHKYKQINIVEIMKILRQLHVKY
ITFFDENYPYLLKEIYDYPFVLFYKGDKKLFLSNQTLAIVGARKCSNYTQEALQYLFPSFKEKNITIISGLAEGADSEAH
IQALKIDLSTIAVLGFGHHYYYPRNLVSLRKNIEEKGLVISEYPPFSPIAKYKFPERNRIISGLSKGVLLTESNERSGSR
ITVDCALEQNRNVYVLPGKLFDSKTKGNLLLHQEGASMVVSAEDILQDYLN

Nucleotide


Download         Length: 876 bp        

>NTDB_id=480018 IAR39_RS11430 WP_375338525.1 2286329..2287204(+) (dprA) [Staphylococcus warneri strain WS479]
ATGAATTTGAACGAACACTTTTTACTTAAATTATACTGGTCACATTTTACAACCTCACAAATCCATCAATTTTATCGGTA
CCACCCTCATATTTTCCAAATGACTTCTAATGAACAAGAAACTTCATTATTATGTTGGATTACTCAACATCATCCTACGC
TTCTATCAAAATTTCATAAATATAAACAAATAAATATAGTAGAAATTATGAAAATTCTTCGACAATTACATGTAAAATAT
ATCACTTTTTTCGACGAAAATTATCCTTATTTATTAAAAGAAATCTATGATTATCCATTTGTTCTATTTTATAAGGGAGA
TAAGAAATTATTTTTAAGTAATCAAACTTTGGCAATTGTTGGTGCTAGGAAATGTTCAAATTATACGCAAGAAGCACTAC
AATATCTTTTTCCTTCATTTAAAGAAAAAAATATTACGATTATTTCTGGGTTAGCAGAAGGTGCCGATAGTGAAGCACAC
ATACAAGCCTTGAAAATCGATTTATCAACCATTGCAGTATTAGGGTTTGGTCACCATTATTATTATCCTAGAAACTTAGT
TTCATTAAGAAAAAATATTGAAGAAAAGGGGTTAGTTATTTCGGAGTACCCACCATTTTCGCCAATTGCTAAGTATAAGT
TTCCAGAAAGAAATAGGATTATTAGTGGATTATCAAAAGGTGTATTATTAACTGAATCAAATGAAAGAAGTGGTAGCAGA
ATCACAGTTGATTGTGCATTAGAACAAAATAGAAATGTGTATGTTTTACCGGGTAAATTATTTGATTCAAAAACAAAAGG
AAATCTATTATTGCATCAAGAAGGAGCTTCTATGGTCGTTAGTGCTGAAGACATTTTACAAGACTATTTAAATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

55.986

97.595

0.546
  dprA Staphylococcus aureus N315

55.986

97.595

0.546