Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   IAR39_RS05805 Genome accession   NZ_CP061041
Coordinates   1133848..1134513 (-) Length   221 a.a.
NCBI ID   WP_047211221.1    Uniprot ID   -
Organism   Staphylococcus warneri strain WS479     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1128848..1139513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAR39_RS05790 (IAR39_05790) - 1130084..1132078 (-) 1995 WP_232013275.1 ABC transporter permease -
  IAR39_RS05795 (IAR39_05795) - 1132096..1132842 (-) 747 WP_049414576.1 ABC transporter ATP-binding protein -
  IAR39_RS05800 (IAR39_05800) braS 1132946..1133842 (-) 897 WP_187835399.1 HAMP domain-containing sensor histidine kinase Regulator
  IAR39_RS05805 (IAR39_05805) braR 1133848..1134513 (-) 666 WP_047211221.1 response regulator transcription factor Regulator
  IAR39_RS05810 (IAR39_05810) - 1134535..1134693 (-) 159 WP_002467360.1 hypothetical protein -
  IAR39_RS05815 (IAR39_05815) - 1134950..1136404 (+) 1455 WP_049414579.1 alkaline phosphatase -
  IAR39_RS05820 (IAR39_05820) - 1136487..1136588 (-) 102 WP_015364644.1 SE2200 family small protein -
  IAR39_RS05825 (IAR39_05825) - 1136769..1138232 (-) 1464 WP_058709311.1 poly-gamma-glutamate hydrolase family protein -
  IAR39_RS05830 (IAR39_05830) - 1138467..1138916 (-) 450 WP_002467363.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25499.62 Da        Isoelectric Point: 4.9722

>NTDB_id=480006 IAR39_RS05805 WP_047211221.1 1133848..1134513(-) (braR) [Staphylococcus warneri strain WS479]
MKILIVEDDLVIAESLASELKKWNYDVKMAKQFSHVLDDFKDYLPDLVLLDINLPTLNGFHWCQEMRKISNVPIIFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVAKVQALLRRTYDLAVSNNELNVKGCKLIVDEAKLMFQDDVTQLSLTELQIVK
LLFQNEGKFVNRTALIEKCWESENYIDDNTLAVNMTRLRKKLSQIGLTDFIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=480006 IAR39_RS05805 WP_047211221.1 1133848..1134513(-) (braR) [Staphylococcus warneri strain WS479]
ATGAAGATTTTGATAGTAGAAGATGACTTAGTCATTGCAGAAAGTTTAGCAAGTGAACTTAAGAAATGGAACTATGACGT
TAAGATGGCAAAACAGTTTTCGCATGTTTTAGATGATTTCAAAGACTATCTACCTGACCTAGTACTACTAGATATTAATT
TACCAACTTTAAATGGCTTCCATTGGTGCCAAGAAATGAGAAAAATCTCAAACGTACCTATTATATTTATTAGTTCAAGG
ACAGATAATATGGATCAAATAATGGCGATACAAATGGGTGGCGATGATTTTATTGAGAAACCATTTAATTTATCGTTAAC
AGTTGCTAAAGTACAAGCTTTATTACGACGAACTTATGATTTAGCTGTATCTAATAATGAATTAAATGTTAAGGGATGTA
AACTTATCGTTGATGAGGCTAAGTTAATGTTTCAAGATGATGTGACACAACTGTCTTTAACAGAACTTCAAATCGTTAAA
CTGTTGTTTCAAAATGAAGGTAAATTTGTAAATCGAACAGCTTTAATTGAAAAATGTTGGGAATCAGAGAATTATATTGA
TGATAATACTTTGGCTGTAAATATGACACGATTGCGAAAAAAATTAAGTCAAATTGGCTTAACAGATTTTATTGAAACGA
AGAAAAATGTGGGATATAGGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

79.186

100

0.792