Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   IAR39_RS05800 Genome accession   NZ_CP061041
Coordinates   1132946..1133842 (-) Length   298 a.a.
NCBI ID   WP_187835399.1    Uniprot ID   -
Organism   Staphylococcus warneri strain WS479     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1127946..1138842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAR39_RS05785 (IAR39_05785) - 1128774..1129961 (-) 1188 WP_232013276.1 DUF4064 domain-containing protein -
  IAR39_RS05790 (IAR39_05790) - 1130084..1132078 (-) 1995 WP_232013275.1 ABC transporter permease -
  IAR39_RS05795 (IAR39_05795) - 1132096..1132842 (-) 747 WP_049414576.1 ABC transporter ATP-binding protein -
  IAR39_RS05800 (IAR39_05800) braS 1132946..1133842 (-) 897 WP_187835399.1 HAMP domain-containing sensor histidine kinase Regulator
  IAR39_RS05805 (IAR39_05805) braR 1133848..1134513 (-) 666 WP_047211221.1 response regulator transcription factor Regulator
  IAR39_RS05810 (IAR39_05810) - 1134535..1134693 (-) 159 WP_002467360.1 hypothetical protein -
  IAR39_RS05815 (IAR39_05815) - 1134950..1136404 (+) 1455 WP_049414579.1 alkaline phosphatase -
  IAR39_RS05820 (IAR39_05820) - 1136487..1136588 (-) 102 WP_015364644.1 SE2200 family small protein -
  IAR39_RS05825 (IAR39_05825) - 1136769..1138232 (-) 1464 WP_058709311.1 poly-gamma-glutamate hydrolase family protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34384.77 Da        Isoelectric Point: 5.6517

>NTDB_id=480005 IAR39_RS05800 WP_187835399.1 1132946..1133842(-) (braS) [Staphylococcus warneri strain WS479]
MLLTFIKSIKNEIAIVTFISLLFVLIFFVFSLPQSALMLGVAIILFIMCIYWWISYLGFQKQEKLKEKVVSLEEELFEMK
NKQIEYRKDVESYFLTWVHQIKTPITASQLLLERNEPNVANQVRQEIVQIDNYTRLALSYLKLLNEASDMTITEVNIDDL
IKPLIMKYRIHFIEQHTKIHYQSNDDNILTDAQWTSILIEQILNNALKYARGKDIWIDFDSTSQQLSIKDNGIGISQADL
PKIFDKGYSGYNGSLNESSSGIGLFIVKHIAQHLNLNVEVTSDLNKGTQFTISFPTQS

Nucleotide


Download         Length: 897 bp        

>NTDB_id=480005 IAR39_RS05800 WP_187835399.1 1132946..1133842(-) (braS) [Staphylococcus warneri strain WS479]
ATGTTACTAACGTTTATTAAATCAATTAAAAATGAAATAGCGATTGTTACGTTTATATCCTTACTGTTTGTACTCATTTT
CTTTGTGTTTTCACTCCCCCAAAGTGCGCTAATGCTTGGTGTAGCAATTATTTTATTTATTATGTGCATTTATTGGTGGA
TCAGTTATTTAGGTTTTCAAAAACAAGAAAAACTTAAAGAAAAAGTAGTATCACTCGAAGAAGAACTATTTGAAATGAAA
AACAAACAAATTGAATATCGTAAAGATGTTGAAAGTTATTTCTTAACATGGGTACATCAAATCAAAACGCCAATCACTGC
ATCGCAACTATTGCTAGAACGTAATGAACCTAATGTTGCCAATCAAGTGAGACAAGAAATTGTACAAATTGATAACTATA
CTCGTTTAGCACTAAGTTACTTAAAATTACTTAATGAAGCCTCGGATATGACAATCACAGAGGTGAACATAGATGATTTA
ATTAAACCTTTAATTATGAAATATCGAATTCACTTTATTGAACAACATACTAAAATTCATTATCAATCTAATGATGATAA
TATCTTAACAGATGCACAATGGACTTCAATATTGATAGAACAGATACTGAATAACGCATTAAAATATGCACGTGGAAAAG
ATATTTGGATTGACTTTGACTCAACGTCTCAACAATTATCTATTAAAGATAACGGGATTGGTATTAGTCAAGCAGACTTG
CCGAAAATCTTTGACAAAGGATATTCTGGTTACAATGGTAGCCTTAATGAATCCTCAAGCGGCATTGGATTGTTTATCGT
TAAACATATTGCGCAACATCTGAATTTAAATGTTGAAGTAACATCAGACTTGAATAAAGGTACACAATTTACAATTAGCT
TTCCAACGCAAAGCTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(198-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

61.356

98.993

0.607