Detailed information NTG0047992

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NMBM04240196_RS01905
• Genome accession: NC_017515
• Coordinates: 345655..346515 (-)
• Length: 286 a.a.
• NCBI ID: WP_002220276.1
• Uniprot ID: -
• Organism: Neisseria meningitidis M04-240196
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 340655..351515

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMBM04240196_RS01875 (NMBM04240196_0334)	ispB	341142..342116 (+)	975	WP_002226981.1	octaprenyl diphosphate synthase	-
NMBM04240196_RS01880 (NMBM04240196_0335)	-	342121..342567 (+)	447	WP_002220271.1	DUF441 domain-containing protein	-
NMBM04240196_RS01890 (NMBM04240196_0337)	pilF	343058..344734 (+)	1677	WP_002221967.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NMBM04240196_RS01895 (NMBM04240196_0338)	-	344819..345028 (-)	210	WP_002216401.1	DNA gyrase inhibitor YacG	-
NMBM04240196_RS01900 (NMBM04240196_0339)	coaE	345021..345653 (-)	633	WP_002216402.1	dephospho-CoA kinase	-
NMBM04240196_RS01905 (NMBM04240196_0340)	pilD	345655..346515 (-)	861	WP_002220276.1	A24 family peptidase	Machinery gene
NMBM04240196_RS01910 (NMBM04240196_0341)	pilG	346589..347821 (-)	1233	WP_002216405.1	type 4 pilus assembly protein PilG	Machinery gene
NMBM04240196_RS01915 (NMBM04240196_0342)	pgi	348331..349974 (+)	1644	WP_014581327.1	glucose-6-phosphate isomerase	-
NMBM04240196_RS11975	-	349944..350135 (+)	192	WP_072104424.1	hypothetical protein	-
NMBM04240196_RS01920 (NMBM04240196_0343)	dapD	350145..350966 (+)	822	WP_002228980.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31359.40 Da
• Isoelectric Point: 8.2213

>NTDB_id=47992 NMBM04240196_RS01905 WP_002220276.1 345655..346515(-) (pilD) [Neisseria meningitidis M04-240196]
MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVFAKEYLNLPLTEEESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide

• Length: 861 bp

>NTDB_id=47992 NMBM04240196_RS01905 WP_002220276.1 345655..346515(-) (pilD) [Neisseria meningitidis M04-240196]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCGGTGTTCGGGCTGCTGGTCGGAAGTTTCTTAAA
TGTCGTCATTTACCGCGTGCCGGTCATGATGGAGCGCGGCTGGACGGTATTTGCCAAAGAATATTTAAACCTGCCGCTGA
CCGAAGAGGAAAGCCGTACCTTCAACCTGATGAAACCGGATTCCTGCTGTCCCAAATGCCGCGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGCTACCTGCTCCTGCGCGGCAAATGCGCCTCCTGCCAAACCAAAATCAGCATACGCTATCC
CTTAATCGAACTGCTGACCGGCGTATTGTTCGGGCTGGTTGCCTGGCAATACGGCTGGTCTTGGATTACATTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCGATATGGCTTTTATGCGCGGTATATAAACTGATTAAAGGCGAAATCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	96.14	99.65	0.958
pilD	Vibrio cholerae strain A1552	44.444	100	0.448
pilD	Vibrio campbellii strain DS40M4	44.928	96.503	0.434
pilD	Acinetobacter baumannii D1279779	46.97	92.308	0.434
pilD	Acinetobacter nosocomialis M2	46.97	92.308	0.434