Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   NMBM04240196_RS01620 Genome accession   NC_017515
Coordinates   286583..287281 (+) Length   232 a.a.
NCBI ID   WP_014575140.1    Uniprot ID   -
Organism   Neisseria meningitidis M04-240196     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 281583..292281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM04240196_RS01600 (NMBM04240196_0282) trpC 282906..283688 (-) 783 WP_014581314.1 indole-3-glycerol phosphate synthase TrpC -
  NMBM04240196_RS01605 (NMBM04240196_0283) - 283739..284695 (-) 957 WP_014581315.1 alpha/beta fold hydrolase -
  NMBM04240196_RS15680 - 284692..284823 (-) 132 WP_255304562.1 hypothetical protein -
  NMBM04240196_RS01610 (NMBM04240196_0284) murJ 284827..286365 (-) 1539 WP_014581316.1 murein biosynthesis integral membrane protein MurJ -
  NMBM04240196_RS01615 - 286365..286556 (-) 192 WP_002260368.1 hypothetical protein -
  NMBM04240196_RS01620 (NMBM04240196_0285) dsbA1 286583..287281 (+) 699 WP_014575140.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NMBM04240196_RS01625 (NMBM04240196_0286) amgK 287338..288342 (-) 1005 WP_002239466.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  NMBM04240196_RS01630 (NMBM04240196_0287) - 288412..290820 (+) 2409 WP_002254130.1 LPS-assembly protein LptD -
  NMBM04240196_RS01635 (NMBM04240196_0288) - 290925..292085 (+) 1161 WP_041917622.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25248.84 Da        Isoelectric Point: 5.9457

>NTDB_id=47989 NMBM04240196_RS01620 WP_014575140.1 286583..287281(+) (dsbA1) [Neisseria meningitidis M04-240196]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKNVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=47989 NMBM04240196_RS01620 WP_014575140.1 286583..287281(+) (dsbA1) [Neisseria meningitidis M04-240196]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAAATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCTTACGAATCTCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGCAAATATAAAGTCGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

99.569

100

0.996
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment