Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IAU62_RS07275 Genome accession   NZ_CP061029
Coordinates   1487304..1487699 (-) Length   131 a.a.
NCBI ID   WP_002447777.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain Z0118SE0132     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1482304..1492699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU62_RS07250 thiE 1483045..1483683 (-) 639 WP_002458704.1 thiamine phosphate synthase -
  IAU62_RS07255 thiM 1483689..1484477 (-) 789 WP_002486939.1 hydroxyethylthiazole kinase -
  IAU62_RS07260 thiD 1484470..1485291 (-) 822 WP_002458705.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IAU62_RS07265 tenA 1485284..1485973 (-) 690 WP_002447775.1 thiaminase II -
  IAU62_RS07270 - 1486257..1486916 (-) 660 WP_002447776.1 transglycosylase family protein -
  IAU62_RS07275 ssb 1487304..1487699 (-) 396 WP_002447777.1 single-stranded DNA-binding protein Machinery gene
  IAU62_RS07280 - 1487890..1488330 (+) 441 WP_002458706.1 YwpF-like family protein -
  IAU62_RS07285 fabZ 1488648..1489085 (-) 438 WP_002447779.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IAU62_RS07290 murA 1489119..1490384 (-) 1266 WP_002447780.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IAU62_RS07295 - 1490494..1490727 (-) 234 WP_002495678.1 DUF1146 family protein -
  IAU62_RS07300 - 1490876..1491280 (-) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15144.99 Da        Isoelectric Point: 5.2661

>NTDB_id=479873 IAU62_RS07275 WP_002447777.1 1487304..1487699(-) (ssb) [Staphylococcus epidermidis strain Z0118SE0132]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=479873 IAU62_RS07275 WP_002447777.1 1487304..1487699(-) (ssb) [Staphylococcus epidermidis strain Z0118SE0132]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733