Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   IAU62_RS02645 Genome accession   NZ_CP061029
Coordinates   499195..499770 (+) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain Z0118SE0132     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 494195..504770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU62_RS02620 - 495092..496597 (+) 1506 WP_002458038.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  IAU62_RS02625 - 496700..497302 (-) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  IAU62_RS02630 - 497308..497493 (-) 186 WP_001829339.1 DUF2187 family protein -
  IAU62_RS02635 - 497698..498684 (+) 987 WP_002496518.1 lipoate--protein ligase -
  IAU62_RS02640 - 498762..498980 (-) 219 WP_001829292.1 IDEAL domain-containing protein -
  IAU62_RS02645 comK/comK1 499195..499770 (+) 576 WP_001829272.1 competence protein ComK Regulator
  IAU62_RS12145 - 500725..500823 (+) 99 WP_227485966.1 plasmid recombination protein -
  IAU62_RS12150 mobV 500842..501300 (+) 459 Protein_527 MobV family relaxase -
  IAU62_RS02670 - 501382..501498 (+) 117 WP_002458042.1 hypothetical protein -
  IAU62_RS02675 - 501519..501740 (+) 222 WP_002446125.1 hypothetical protein -
  IAU62_RS02680 - 501965..502912 (+) 948 WP_162153185.1 fatty acid desaturase family protein -
  IAU62_RS02685 - 502916..503533 (+) 618 WP_002458044.1 LysE/ArgO family amino acid transporter -
  IAU62_RS02690 - 503603..503761 (-) 159 WP_002446129.1 replication/maintenance protein RepL -
  IAU62_RS12320 - 504195..504311 (-) 117 WP_002486587.1 SAR1012 family small protein -
  IAU62_RS02695 - 504415..504630 (-) 216 WP_001831694.1 TM2 domain-containing protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=479854 IAU62_RS02645 WP_001829272.1 499195..499770(+) (comK/comK1) [Staphylococcus epidermidis strain Z0118SE0132]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=479854 IAU62_RS02645 WP_001829272.1 499195..499770(+) (comK/comK1) [Staphylococcus epidermidis strain Z0118SE0132]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTATGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCCTCTTTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743