Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   IBC03_RS08980 Genome accession   NZ_CP061025
Coordinates   1739635..1740591 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain 13496     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1734635..1745591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC03_RS08950 (IBC03_08970) proC 1735196..1735966 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  IBC03_RS08955 (IBC03_08975) - 1735996..1736658 (-) 663 WP_138496727.1 type II CAAX endopeptidase family protein -
  IBC03_RS08960 (IBC03_08980) - 1736755..1737198 (-) 444 WP_011681680.1 hypothetical protein -
  IBC03_RS10355 - 1737272..1737697 (-) 426 WP_014608739.1 CPBP family intramembrane glutamic endopeptidase -
  IBC03_RS08970 (IBC03_08990) - 1737940..1738137 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  IBC03_RS08975 (IBC03_08995) - 1738386..1739579 (-) 1194 WP_014608740.1 acetate kinase -
  IBC03_RS08980 (IBC03_09000) comYH 1739635..1740591 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  IBC03_RS08985 (IBC03_09005) comGG 1740636..1740956 (-) 321 WP_278249177.1 competence type IV pilus minor pilin ComGG -
  IBC03_RS08990 (IBC03_09010) - 1740977..1741912 (-) 936 WP_138496752.1 IS30 family transposase -
  IBC03_RS08995 (IBC03_09015) comYF 1741995..1742429 (-) 435 WP_138496599.1 competence type IV pilus minor pilin ComGF Machinery gene
  IBC03_RS09000 (IBC03_09020) comGE 1742413..1742706 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  IBC03_RS09005 (IBC03_09025) comYD 1742678..1743106 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  IBC03_RS09010 (IBC03_09030) comYC 1743066..1743392 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  IBC03_RS09015 (IBC03_09035) comYB 1743389..1744489 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  IBC03_RS09020 (IBC03_09040) comGA/cglA/cilD 1744371..1745312 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=479841 IBC03_RS08980 WP_011226622.1 1739635..1740591(-) (comYH) [Streptococcus thermophilus strain 13496]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=479841 IBC03_RS08980 WP_011226622.1 1739635..1740591(-) (comYH) [Streptococcus thermophilus strain 13496]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682