Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA/cilD   Type   Machinery gene
Locus tag   IBC03_RS09020 Genome accession   NZ_CP061025
Coordinates   1744371..1745312 (-) Length   313 a.a.
NCBI ID   WP_014608745.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 13496     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1739371..1750312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC03_RS08980 (IBC03_09000) comYH 1739635..1740591 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  IBC03_RS08985 (IBC03_09005) comGG 1740636..1740956 (-) 321 WP_278249177.1 competence type IV pilus minor pilin ComGG -
  IBC03_RS08990 (IBC03_09010) - 1740977..1741912 (-) 936 WP_138496752.1 IS30 family transposase -
  IBC03_RS08995 (IBC03_09015) comYF 1741995..1742429 (-) 435 WP_138496599.1 competence type IV pilus minor pilin ComGF Machinery gene
  IBC03_RS09000 (IBC03_09020) comGE 1742413..1742706 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  IBC03_RS09005 (IBC03_09025) comYD 1742678..1743106 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  IBC03_RS09010 (IBC03_09030) comYC 1743066..1743392 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  IBC03_RS09015 (IBC03_09035) comYB 1743389..1744489 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  IBC03_RS09020 (IBC03_09040) comGA/cglA/cilD 1744371..1745312 (-) 942 WP_014608745.1 competence type IV pilus ATPase ComGA Machinery gene
  IBC03_RS09025 (IBC03_09045) - 1745393..1745755 (-) 363 WP_014608746.1 DUF1033 family protein -
  IBC03_RS09030 (IBC03_09050) rpoC 1745914..1749552 (-) 3639 WP_011226631.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35508.70 Da        Isoelectric Point: 6.6091

>NTDB_id=479846 IBC03_RS09020 WP_014608745.1 1744371..1745312(-) (comGA/cglA/cilD) [Streptococcus thermophilus strain 13496]
MVTEFAKEMIKNADSCGAQDIYVIPRQDNYELYMRVGQERRLIDVYRPDFMASLIGHFKFVARMMVGEKRRSQLGSCDYD
CGDGHLVSLRLSTVGDYRGLESLVIRILHSERRELVYWNQGIQPIKDALDYRGLYLFAGPVGSGKTTLMHELVQERFKGQ
QVISIEDPVEIKQDNVLQLQVNQAIDMTYDSLIKLSLRHRPDVLIIGEIRDKETARAVIRASLTGVTVLSTIHAKSIAGV
YERLLDLGVDKSELDNALQGIAYMRLIKGGGVIDFARENFQNHSSTNWNQQLEGLVKQGCLTERDIQGEKIKD

Nucleotide


Download         Length: 942 bp        

>NTDB_id=479846 IBC03_RS09020 WP_014608745.1 1744371..1745312(-) (comGA/cglA/cilD) [Streptococcus thermophilus strain 13496]
ATGGTAACAGAATTTGCTAAGGAAATGATCAAAAATGCTGATAGTTGTGGGGCTCAAGACATCTATGTCATTCCACGTCA
GGATAATTATGAGCTCTATATGCGAGTCGGGCAAGAGAGGAGATTGATTGATGTATATCGGCCTGATTTCATGGCTAGTC
TTATTGGTCACTTTAAATTTGTGGCGAGAATGATGGTGGGTGAGAAGCGTAGGAGTCAACTGGGTTCATGTGACTATGAT
TGTGGTGACGGTCACTTGGTTTCTCTGCGTTTATCAACTGTTGGAGACTATCGAGGTTTGGAGAGCTTGGTTATCCGTAT
CCTACATTCCGAACGTCGAGAATTAGTGTATTGGAATCAAGGAATCCAGCCTATTAAGGATGCCTTGGATTATAGAGGAC
TGTATCTCTTTGCGGGTCCCGTAGGTTCTGGGAAGACCACACTTATGCATGAGTTGGTTCAGGAGCGTTTTAAGGGGCAG
CAGGTAATTTCTATTGAGGATCCTGTTGAAATCAAACAGGATAATGTCTTGCAACTCCAGGTTAATCAGGCGATTGATAT
GACCTATGATAGTTTGATTAAGCTATCTCTACGTCACCGTCCAGATGTTTTGATTATTGGGGAGATTCGGGATAAGGAGA
CTGCCCGGGCAGTTATTAGAGCTAGTCTAACAGGTGTAACTGTTCTCTCAACTATTCATGCTAAGAGTATTGCTGGCGTT
TACGAACGTCTCTTGGACCTTGGTGTAGATAAGTCTGAGTTGGATAATGCTCTACAAGGCATTGCCTACATGCGTTTGAT
CAAGGGAGGAGGTGTGATTGATTTTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAG
GTTTGGTTAAACAAGGATGTCTCACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.273

99.361

0.649
  comYA Streptococcus mutans UA159

64.537

100

0.645
  comYA Streptococcus mutans UA140

64.537

100

0.645
  comGA/cglA/cilD Streptococcus pneumoniae D39

63.987

99.361

0.636
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

63.987

99.361

0.636
  comGA/cglA/cilD Streptococcus pneumoniae R6

63.987

99.361

0.636
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

63.987

99.361

0.636
  comYA Streptococcus gordonii str. Challis substr. CH1

62.939

100

0.629
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.218

99.681

0.61
  comGA Lactococcus lactis subsp. cremoris KW2

50.804

99.361

0.505
  comGA Latilactobacillus sakei subsp. sakei 23K

38.487

97.125

0.374