Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBM01240149_RS14940 Genome accession   NC_017514
Coordinates   604628..605092 (+) Length   154 a.a.
NCBI ID   WP_162467464.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240149     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 599628..610092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240149_RS14940 comE 604628..605092 (+) 465 WP_162467464.1 ComEA family DNA-binding protein Machinery gene
  NMBM01240149_RS02995 (NMBM01240149_0532) - 605206..605643 (-) 438 Protein_542 HK97 family phage prohead protease -
  NMBM01240149_RS03000 (NMBM01240149_0533) - 605755..606348 (-) 594 WP_002218492.1 hypothetical protein -
  NMBM01240149_RS03005 (NMBM01240149_0534) prmB 606493..607392 (+) 900 WP_002232685.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  NMBM01240149_RS03010 (NMBM01240149_0535) - 607673..608410 (+) 738 WP_002223538.1 toxin-antitoxin system YwqK family antitoxin -
  NMBM01240149_RS03015 (NMBM01240149_0536) - 608536..608808 (+) 273 WP_002218494.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16464.73 Da        Isoelectric Point: 10.9585

>NTDB_id=47983 NMBM01240149_RS14940 WP_162467464.1 604628..605092(+) (comE) [Neisseria meningitidis M01-240149]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPATTAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=47983 NMBM01240149_RS14940 WP_162467464.1 604628..605092(+) (comE) [Neisseria meningitidis M01-240149]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCAACGACCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727

Multiple sequence alignment