Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   IBC03_RS06960 Genome accession   NZ_CP061025
Coordinates   1346239..1347168 (-) Length   309 a.a.
NCBI ID   WP_002951426.1    Uniprot ID   A0A7U7CIU5
Organism   Streptococcus thermophilus strain 13496     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1341239..1352168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC03_RS06935 (IBC03_06950) - 1342525..1343340 (-) 816 WP_014608539.1 Cof-type HAD-IIB family hydrolase -
  IBC03_RS06940 (IBC03_06955) - 1343333..1344127 (-) 795 WP_138496582.1 HAD family hydrolase -
  IBC03_RS06945 (IBC03_06960) - 1344312..1344689 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  IBC03_RS06950 (IBC03_06965) - 1344694..1345392 (+) 699 WP_014608540.1 ABC transporter ATP-binding protein -
  IBC03_RS06955 (IBC03_06970) - 1345404..1346189 (+) 786 WP_002951425.1 hypothetical protein -
  IBC03_RS06960 (IBC03_06975) amiF 1346239..1347168 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  IBC03_RS06965 (IBC03_06980) amiE 1347161..1348246 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  IBC03_RS06970 (IBC03_06985) amiD 1348256..1349182 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  IBC03_RS06975 (IBC03_06990) amiC 1349182..1350675 (-) 1494 WP_011227407.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35171.28 Da        Isoelectric Point: 6.5989

>NTDB_id=479827 IBC03_RS06960 WP_002951426.1 1346239..1347168(-) (amiF) [Streptococcus thermophilus strain 13496]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=479827 IBC03_RS06960 WP_002951426.1 1346239..1347168(-) (amiF) [Streptococcus thermophilus strain 13496]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGATCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7CIU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

100

100

1
  amiF Streptococcus thermophilus LMD-9

99.676

100

0.997
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981