Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SPN034156_RS08005 Genome accession   NC_021006
Coordinates   1482231..1482863 (+) Length   210 a.a.
NCBI ID   WP_000698438.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN034156     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477231..1487863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034156_RS07980 (SPN034156_14350) mvaD 1477508..1478461 (+) 954 WP_000373456.1 diphosphomevalonate decarboxylase -
  SPN034156_RS07985 (SPN034156_14360) - 1478448..1479455 (+) 1008 WP_000562427.1 phosphomevalonate kinase -
  SPN034156_RS07990 (SPN034156_14370) fni 1479439..1480449 (+) 1011 WP_000210616.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  SPN034156_RS07995 (SPN034156_14380) liaF 1480527..1481225 (+) 699 WP_001224637.1 cell wall-active antibiotics response protein LiaF -
  SPN034156_RS08000 (SPN034156_14390) - 1481222..1482217 (+) 996 WP_000743662.1 sensor histidine kinase -
  SPN034156_RS08005 (SPN034156_14400) vraR 1482231..1482863 (+) 633 WP_000698438.1 response regulator transcription factor Regulator
  SPN034156_RS12865 (SPN034156_14410) - 1482939..1483633 (+) 695 Protein_1492 DNA alkylation repair protein -
  SPN034156_RS08025 (SPN034156_14420) - 1484092..1484694 (+) 603 Protein_1493 serine protease -
  SPN034156_RS08030 (SPN034156_14430) - 1484996..1485355 (+) 360 WP_000378120.1 tyrosine-type recombinase/integrase -
  SPN034156_RS08035 (SPN034156_14440) tig 1485549..1486832 (+) 1284 WP_000116463.1 trigger factor -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23583.06 Da        Isoelectric Point: 4.5791

>NTDB_id=47982 SPN034156_RS08005 WP_000698438.1 1482231..1482863(+) (vraR) [Streptococcus pneumoniae SPN034156]
MKILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNGIDATLAILKEWPEAKILIV
TSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIAKGY
ENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQATVYAFQHHLVGQEEF

Nucleotide


Download         Length: 633 bp        

>NTDB_id=47982 SPN034156_RS08005 WP_000698438.1 1482231..1482863(+) (vraR) [Streptococcus pneumoniae SPN034156]
ATGAAAATTTTACTAGTAGATGACCATGAAATGGTCCGATTGGGCTTGAAAAGCTACTTTGACCTCCAAGACGATGTAGA
AGTTGTGGGTGAGGCGTCCAACGGGTCTCAAGGGATTGACTTGGCCTTGGAACTGCGTCCAGATGTCATTGTCATGGATA
TTGTCATGCCTGAGATGAATGGGATTGACGCGACCTTAGCAATCCTTAAAGAATGGCCTGAAGCCAAGATTTTGATTGTG
ACCTCTTATTTGGACAATGAAAAAATCATGCCAGTCTTAGATGCTGGTGCCAAAGGCTATATGCTCAAGACTTCTAGTGC
AGATGAATTGCTTCATGCCGTCAGTAAGGTAGCTGCTGGCGAGCTGGCCATTGAGCAAGAGGTTAGCAAGAAGGTTGAAT
ACCACCGCAATCATATGGAACTTCATGAAGAATTGACTGCGCGTGAGCGAGATGTTCTCCAACTCATCGCCAAGGGCTAC
GAAAATCAGCGCATCGCAGATGACCTCTTTATCTCTCTCAAGACGGTCAAGACCCACGTGTCCAATATTCTTGCCAAACT
TGAAGTCAGCGATCGTACCCAGGCGACTGTCTATGCCTTTCAGCACCATTTGGTGGGGCAAGAGGAGTTTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-114)

Bacterial regulatory proteins, luxR family (GerE)

(145-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.153

99.524

0.519
  degU Bacillus subtilis subsp. subtilis str. 168

38.393

100

0.41

Multiple sequence alignment