Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBM01240149_RS14895 Genome accession   NC_017514
Coordinates   186159..186623 (+) Length   154 a.a.
NCBI ID   WP_162051247.1    Uniprot ID   -
Organism   Neisseria meningitidis M01-240149     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 181159..191623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM01240149_RS14895 comE 186159..186623 (+) 465 WP_162051247.1 ComEA family DNA-binding protein Machinery gene
  NMBM01240149_RS00965 (NMBM01240149_0171) comP 186711..187160 (+) 450 WP_002214937.1 type IV pilin protein Machinery gene
  NMBM01240149_RS15675 (NMBM01240149_0172) - 187250..187590 (-) 341 Protein_164 5'-nucleotidase -
  NMBM01240149_RS00975 (NMBM01240149_0173) - 187702..187914 (-) 213 WP_002224145.1 SWIM zinc finger family protein -
  NMBM01240149_RS00980 (NMBM01240149_0174) - 188146..188613 (+) 468 Protein_166 transposase -
  NMBM01240149_RS11860 - 189045..189260 (+) 216 WP_025458585.1 helix-turn-helix domain-containing protein -
  NMBM01240149_RS00995 (NMBM01240149_0175) - 189262..189861 (+) 600 WP_002219927.1 ScaI family restriction endonuclease -
  NMBM01240149_RS01000 (NMBM01240149_0176) - 189918..190748 (-) 831 WP_033908430.1 DNA-methyltransferase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16516.81 Da        Isoelectric Point: 10.8645

>NTDB_id=47982 NMBM01240149_RS14895 WP_162051247.1 186159..186623(+) (comE) [Neisseria meningitidis M01-240149]
MLCPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=47982 NMBM01240149_RS14895 WP_162051247.1 186159..186623(+) (comE) [Neisseria meningitidis M01-240149]
TTGCTTTGCCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGTGCGCCCGCACCAAAAGGCCCAGCCAAACCGGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment