NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	J5F39_RS07575	Genome accession	NZ_CP071936
Coordinates	1565776..1567296 (-)	Length	506 a.a.
NCBI ID	WP_283491893.1	Uniprot ID	-
Organism	Helicobacter pylori strain MTT03
Function	interact with DprA (predicted from homology) Homologous recombination

Genomic Context

Location: 1560776..1572296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5F39_RS07555	-	1561656..1562336 (+)	681	WP_283491891.1	CAAX protease	-
J5F39_RS07560	-	1562468..1562719 (+)	252	WP_000006537.1	hypothetical protein	-
J5F39_RS07565	-	1562691..1563494 (+)	804	WP_077386766.1	nucleotidyl transferase AbiEii/AbiGii toxin family protein	-
J5F39_RS07570	-	1563691..1565751 (-)	2061	WP_283491892.1	heavy metal translocating P-type ATPase	-
J5F39_RS07575	comM	1565776..1567296 (-)	1521	WP_283491893.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
J5F39_RS07580	def	1567302..1567826 (-)	525	WP_187866076.1	peptide deformylase	-
J5F39_RS07585	clpP	1567831..1568418 (-)	588	WP_000540576.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	-
J5F39_RS07590	tig	1568439..1569794 (-)	1356	WP_078259851.1	trigger factor	-
J5F39_RS07595	-	1569904..1570740 (-)	837	WP_283491894.1	outer membrane protein	-
J5F39_RS07600	hpaA	1570770..1571552 (-)	783	WP_078263109.1	flagellar sheath lipoprotein HpaA	-
J5F39_RS07605	moaC	1571671..1572147 (-)	477	WP_001131576.1	cyclic pyranopterin monophosphate synthase MoaC	-

Sequence

Protein

Download Length: 506 a.a. Molecular weight: 57179.13 Da Isoelectric Point: 8.3894

                                >NTDB_id=479720 J5F39_RS07575 WP_283491893.1 1565776..1567296(-) (comM) [Helicobacter pylori strain MTT03]

MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANSSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF

DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKVIAPKANEELFSLIPNLQCFFVEHFKE

ALEILQNPETKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR

MRYILPPLSLNEILEATKLRILSEQDSTYYPLRSFRNPHQSASKSSILGSSSLKEPKPGEIALAHNGMLFFDELPHFKKD

ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE

GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNTEAQKLLEQAVERFNLSMRSVNKVKKVAR

TIADLNACENIEKSHMLKALSFRKIS

Nucleotide

Download Length: 1521 bp

                                >NTDB_id=479720 J5F39_RS07575 WP_283491893.1 1565776..1567296(-) (comM) [Helicobacter pylori strain MTT03]

ATGATTAACACGATATTTTGTGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC

TTTGCCGGCGTTTGTGATTTCAGGCTTGGCTAATAGCTCTATCCAAGAAGCCAAGCAGCGGGTCCAATCGGCTTTACAAA

ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT

GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG

GCTTGATGGCAAGATTAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAACGCCCCCATGCTAAAG

TCATTGCGCCTAAGGCTAATGAGGAGCTTTTTTCGCTCATCCCTAATTTGCAATGCTTTTTTGTGGAGCATTTTAAAGAA

GCTTTAGAAATTTTGCAAAACCCTGAAACCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA

CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG

CTTTGATCGCTAGTGCTGGGTTTCATAACTTGATTTTAGAGGGAAGCCCAGGGTGTGGGAAAAGCATGATTATTAATCGC

ATGCGCTATATCTTACCTCCCTTAAGCCTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGATAG

CACCTATTACCCCTTAAGAAGCTTTAGGAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA

AAGAGCCAAAACCTGGCGAAATCGCACTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT

ATTTTGGAAGCCTTGAGAGAGCCTTTAGAAAACAATAAATTGGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC

CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGTCTGTGCGGGAATTTGCTCAGCGCCACCAAAGCATGCCGTTGCCAAG

ATAGAGAGATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGACAGGATTGATTTGTTCGTGCAAATGGAAGAG

GGGAATTATAAAGACACGCCATCGCATTCTTGGACTTCAAAAGAGATGCATGAATTAGTATTGTTAGCTTTCAAACAGCA

AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAATGAAGAGCAGATAGAACGATTTTGCCCTTTAAATACTGAAG

CGCAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGTTCTGTCAATAAGGTCAAAAAAGTCGCTAGG

ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA

A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Helicobacter pylori 26695	97.431	100	0.974
comM	Acinetobacter baylyi ADP1	36.399	100	0.368
comM	Legionella pneumophila str. Paris	36.382	99.407	0.362
comM	Legionella pneumophila strain ERS1305867	36.382	99.407	0.362

Detailed information NTG0479720