Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   IBB96_RS06870 Genome accession   NZ_CP061023
Coordinates   1328883..1329809 (-) Length   308 a.a.
NCBI ID   WP_002946409.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 13499     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323883..1334809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB96_RS06840 (IBB96_06860) - 1323960..1324754 (-) 795 WP_138496582.1 HAD family hydrolase -
  IBB96_RS06845 (IBB96_06865) - 1324939..1325316 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  IBB96_RS06850 (IBB96_06870) - 1325321..1326019 (+) 699 WP_207559903.1 ABC transporter ATP-binding protein -
  IBB96_RS06855 (IBB96_06875) - 1326031..1326816 (+) 786 WP_002951425.1 hypothetical protein -
  IBB96_RS06860 (IBB96_06880) amiF 1326866..1327795 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  IBB96_RS06865 (IBB96_06885) amiE 1327788..1328873 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  IBB96_RS06870 (IBB96_06890) amiD 1328883..1329809 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  IBB96_RS06875 (IBB96_06895) amiC 1329809..1331302 (-) 1494 WP_011227407.1 ABC transporter permease Regulator
  IBB96_RS06880 (IBB96_06900) amiA3 1331364..1333331 (-) 1968 WP_207563326.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34694.85 Da        Isoelectric Point: 9.7054

>NTDB_id=479712 IBB96_RS06870 WP_002946409.1 1328883..1329809(-) (amiD) [Streptococcus thermophilus strain 13499]
MASIDKSKFQFVKRDDFASETIDAPSYSYWKSVMRQFFKKKSTVVMLGILITIILMSFIYPMFSKFDFNDVSKVNDFSLR
YVHPNAQYWFGTDGNGKSLFDSVWFGARNSILIAVIATFLNVIIGLLVGAVWGISKTFDMIMMEIYNIISNIPSLLVVIV
LTYSLGAGFWNMIFAMTVTGWIGIAYTIRIQIMRYRDLEYNLASRNLGTPTAKIVIKNIMPQLVSVIVTMASQLLPGFIS
YEAFLSYFGLGLPVTTPSLGRLISDYAQNVTVNAYLFWIPLTTLILVSLALFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=479712 IBB96_RS06870 WP_002946409.1 1328883..1329809(-) (amiD) [Streptococcus thermophilus strain 13499]
ATGGCTTCAATTGATAAAAGTAAGTTCCAATTTGTAAAGCGCGATGATTTTGCCTCTGAAACAATTGATGCACCGTCTTA
CTCATACTGGAAATCAGTGATGCGTCAATTTTTTAAAAAGAAATCAACAGTTGTAATGTTGGGAATCTTGATTACTATTA
TTTTAATGAGTTTCATCTACCCAATGTTTTCTAAATTTGACTTCAATGATGTCTCAAAAGTAAATGATTTCAGTTTGCGT
TATGTACATCCAAACGCTCAATACTGGTTCGGTACTGACGGTAATGGTAAGTCTCTATTTGACAGTGTTTGGTTTGGGGC
TCGTAATTCTATCCTTATCGCTGTTATCGCTACCTTCCTGAATGTTATAATTGGTTTGCTTGTAGGTGCTGTTTGGGGGA
TTTCTAAGACCTTCGATATGATTATGATGGAAATCTACAACATCATCTCAAATATTCCCTCTCTCCTTGTGGTTATCGTC
TTGACTTACTCATTAGGTGCTGGTTTCTGGAATATGATTTTTGCCATGACCGTAACAGGTTGGATCGGTATTGCCTATAC
AATCCGTATTCAAATCATGCGTTATCGTGATTTGGAGTATAACTTGGCTTCTCGCAATTTGGGAACACCAACGGCTAAGA
TTGTGATTAAAAATATCATGCCACAACTTGTGTCAGTTATTGTAACCATGGCTAGTCAACTTTTGCCAGGATTTATCTCT
TATGAGGCCTTCCTTTCATACTTTGGTTTGGGTCTTCCTGTTACTACGCCTAGTCTTGGTCGTTTGATTTCAGACTATGC
ACAGAACGTTACAGTCAATGCCTATCTCTTCTGGATTCCATTGACTACCTTGATTCTTGTTTCTCTTGCCCTCTTTATTG
TTGGTCAAAACTTAGCGGATGCTAGTGACCCACGTACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

100

100

1
  amiD Streptococcus thermophilus LMD-9

100

100

1
  amiD Streptococcus salivarius strain HSISS4

96.429

100

0.964