Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   J5F39_RS05720 Genome accession   NZ_CP071936
Coordinates   1192883..1193341 (-) Length   152 a.a.
NCBI ID   WP_185081309.1    Uniprot ID   -
Organism   Helicobacter pylori strain MTT03     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1187883..1198341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5F39_RS05705 - 1188296..1189060 (-) 765 WP_283491753.1 glycosyltransferase family 2 protein -
  J5F39_RS05710 tlpB 1189091..1190788 (-) 1698 WP_283491754.1 methyl-accepting chemotaxis protein TlpB -
  J5F39_RS05715 - 1191002..1192714 (-) 1713 WP_346771143.1 5'-nucleotidase C-terminal domain-containing protein -
  J5F39_RS05720 luxS 1192883..1193341 (-) 459 WP_185081309.1 S-ribosylhomocysteine lyase Regulator
  J5F39_RS05725 - 1193381..1194523 (-) 1143 WP_097698816.1 cystathionine gamma-synthase -
  J5F39_RS05730 - 1194544..1195461 (-) 918 WP_001874454.1 O-acetylserine-dependent cystathionine beta-synthase -
  J5F39_RS05735 - 1195576..1196153 (+) 578 Protein_1127 hypothetical protein -
  J5F39_RS05740 dnaK 1196395..1198257 (-) 1863 WP_283491756.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17381.83 Da        Isoelectric Point: 6.8403

>NTDB_id=479711 J5F39_RS05720 WP_185081309.1 1192883..1193341(-) (luxS) [Helicobacter pylori strain MTT03]
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDVIVKYDVRFKQPNKDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGC
QTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=479711 J5F39_RS05720 WP_185081309.1 1192883..1193341(-) (luxS) [Helicobacter pylori strain MTT03]
ATGAAGATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTTAAAGCCCCTTATGTGCGTATCGCTGATCGCAAAAA
GGGCGTTAATGGGGATGTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACAAAGATCACATGGACATGCCAAGCT
TACACTCTTTAGAGCATTTAGTCGCTGAAATTATCCGTAACCATGCCAATTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGTGCAC
AAAATTTAGCACGCGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.844

92.763

0.388