Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   IBB96_RS02335 Genome accession   NZ_CP061023
Coordinates   429847..430290 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 13499     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 424847..435290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBB96_RS02315 (IBB96_02320) - 425371..426123 (-) 753 WP_011680801.1 NUDIX hydrolase -
  IBB96_RS02320 (IBB96_02325) - 426187..427293 (-) 1107 WP_014608024.1 AAA family ATPase -
  IBB96_RS02325 (IBB96_02330) gdhA 427637..428989 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  IBB96_RS02330 (IBB96_02335) - 429247..429657 (+) 411 WP_011680804.1 peptide deformylase -
  IBB96_RS02335 (IBB96_02340) rcrR 429847..430290 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  IBB96_RS02340 (IBB96_02345) rcrP 430294..432108 (+) 1815 WP_138496668.1 ABC transporter ATP-binding protein Regulator
  IBB96_RS02345 (IBB96_02350) rcrQ 432098..433876 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  IBB96_RS02350 (IBB96_02355) - 434032..434403 (+) 372 WP_232981380.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=479692 IBB96_RS02335 WP_002945408.1 429847..430290(+) (rcrR) [Streptococcus thermophilus strain 13499]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=479692 IBB96_RS02335 WP_002945408.1 429847..430290(+) (rcrR) [Streptococcus thermophilus strain 13499]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537