Detailed information NTG0479533

Bioinformatically predicted

Overview

• Name: vicR
• Type: Regulator
• Locus tag: IBC04_RS05360
• Genome accession: NZ_CP061020
• Coordinates: 1025152..1025859 (-)
• Length: 235 a.a.
• NCBI ID: WP_011681206.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 24740
• Function: repress comCDE expression; repress comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 1020152..1030859

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBC04_RS05335 (IBC04_05355)	yidA	1020503..1021312 (+)	810	WP_011226081.1	sugar-phosphatase	-
IBC04_RS05340 (IBC04_05360)	-	1021314..1022528 (+)	1215	WP_002953123.1	aminoacyltransferase	-
IBC04_RS05345 (IBC04_05365)	-	1022580..1022941 (-)	362	Protein_1012	YbaN family protein	-
IBC04_RS05350 (IBC04_05370)	vicX	1023001..1023813 (-)	813	WP_011681204.1	MBL fold metallo-hydrolase	Regulator
IBC04_RS05355 (IBC04_05375)	vicK	1023819..1025159 (-)	1341	WP_011681205.1	cell wall metabolism sensor histidine kinase VicK	Regulator
IBC04_RS05360 (IBC04_05380)	vicR	1025152..1025859 (-)	708	WP_011681206.1	response regulator YycF	Regulator
IBC04_RS05365 (IBC04_05385)	-	1026386..1027153 (+)	768	WP_011681207.1	amino acid ABC transporter ATP-binding protein	-
IBC04_RS05370 (IBC04_05390)	-	1027165..1027998 (+)	834	WP_011681208.1	transporter substrate-binding domain-containing protein	-
IBC04_RS05375 (IBC04_05395)	-	1028016..1028714 (+)	699	WP_011681209.1	amino acid ABC transporter permease	-
IBC04_RS05380 (IBC04_05400)	-	1028726..1029376 (+)	651	WP_011226088.1	amino acid ABC transporter permease	-
IBC04_RS05385 (IBC04_05405)	endA	1029448..1030329 (-)	882	WP_011681210.1	DNA/RNA non-specific endonuclease	Machinery gene
IBC04_RS05390 (IBC04_05410)	-	1030391..1030579 (-)	189	WP_011226090.1	DNA-directed RNA polymerase subunit beta	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 27058.98 Da
• Isoelectric Point: 5.0130

>NTDB_id=479533 IBC04_RS05360 WP_011681206.1 1025152..1025859(-) (vicR) [Streptococcus thermophilus strain 24740]
MKKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLEVAKEIRKTSHTPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTETIETAVEESSNSGKQEISIGELVIVPDAFVAKKRGNEVEL
THREFELLFHLATHMGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNYD

Nucleotide

• Length: 708 bp

>NTDB_id=479533 IBC04_RS05360 WP_011681206.1 1025152..1025859(-) (vicR) [Streptococcus thermophilus strain 24740]
ATGAAAAAAATTCTAGTTGTTGATGATGAAAGACCAATCTCCGATATCATCAAGTTTAACCTTACTAAGGAGGGTTATGA
AGTGGTTACGGCCTTTGATGGGCGAGAAGCTTTGGAACAATTTGAAGCTAAAAAACCAGACTTGGTTATTCTGGACTTGA
TGTTGCCTGAACTGGATGGTTTGGAAGTTGCCAAGGAAATCCGTAAAACGAGCCACACACCGATTATCATGCTTTCAGCT
AAAGATAGTGAGTTTGATAAGGTTATCGGATTAGAAATTGGGGCAGACGACTATGTGACTAAGCCATTTTCTAACCGTGA
ATTGTTGGCACGTATTAAAGCCCACTTGCGTCGTACAGAAACGATTGAAACCGCAGTAGAAGAGAGCTCTAACTCTGGCA
AACAAGAAATTTCAATTGGTGAGTTGGTTATTGTTCCGGATGCCTTTGTTGCTAAAAAACGTGGAAACGAAGTTGAGTTG
ACCCACCGTGAATTTGAGTTACTCTTCCACTTGGCAACTCATATGGGACAAGTTATGACGCGTGAACATTTGCTTGAAAC
CGTTTGGGGCTATGACTATTTTGGGGATGTTCGTACTGTGGACGTAACGATTCGTCGTCTGCGTGAAAAAATTGAAGATA
CACCTAGCCGTCCTGAATATATCTTGACGCGTCGTGGTGTCGGTTATTACATGAAGAATTATGACTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (4-113)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (155-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
vicR	Streptococcus mutans UA159	85.532	100	0.855
micA	Streptococcus pneumoniae Cp1015	80.258	99.149	0.796
covR	Lactococcus lactis subsp. lactis strain DGCC12653	46.32	98.298	0.455
covR	Streptococcus salivarius strain HSISS4	45.299	99.574	0.451
scnR	Streptococcus mutans UA159	38.559	100	0.387