Detailed information NTG0479534

Bioinformatically predicted

Overview

• Name: endA
• Type: Machinery gene
• Locus tag: IBC04_RS05385
• Genome accession: NZ_CP061020
• Coordinates: 1029448..1030329 (-)
• Length: 293 a.a.
• NCBI ID: WP_011681210.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 24740
• Function: cleavage of dsDNA into ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1024448..1035329

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IBC04_RS05360 (IBC04_05380)	vicR	1025152..1025859 (-)	708	WP_011681206.1	response regulator YycF	Regulator
IBC04_RS05365 (IBC04_05385)	-	1026386..1027153 (+)	768	WP_011681207.1	amino acid ABC transporter ATP-binding protein	-
IBC04_RS05370 (IBC04_05390)	-	1027165..1027998 (+)	834	WP_011681208.1	transporter substrate-binding domain-containing protein	-
IBC04_RS05375 (IBC04_05395)	-	1028016..1028714 (+)	699	WP_011681209.1	amino acid ABC transporter permease	-
IBC04_RS05380 (IBC04_05400)	-	1028726..1029376 (+)	651	WP_011226088.1	amino acid ABC transporter permease	-
IBC04_RS05385 (IBC04_05405)	endA	1029448..1030329 (-)	882	WP_011681210.1	DNA/RNA non-specific endonuclease	Machinery gene
IBC04_RS05390 (IBC04_05410)	-	1030391..1030579 (-)	189	WP_011226090.1	DNA-directed RNA polymerase subunit beta	-
IBC04_RS05395 (IBC04_05415)	murA	1030581..1031852 (-)	1272	WP_014608377.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
IBC04_RS05400 (IBC04_05420)	-	1031922..1032158 (-)	237	WP_002946959.1	DUF1146 family protein	-
IBC04_RS05405 (IBC04_05425)	galE	1032346..1033359 (-)	1014	WP_011681212.1	UDP-glucose 4-epimerase GalE	-
IBC04_RS05410 (IBC04_05430)	-	1033374..1033829 (-)	456	WP_024009932.1	DUF4832 domain-containing protein	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31773.50 Da
• Isoelectric Point: 10.1789

>NTDB_id=479534 IBC04_RS05385 WP_011681210.1 1029448..1030329(-) (endA) [Streptococcus thermophilus strain 24740]
MAKRKTSLTNKQKRQLVTLIIAALIAVLGYLGTSNKLSPDNPIRQVASLVSGKSNKSIKSNGSTNSQSTPQEQLAETVMT
SSVKSQLGNSLEWNGAGAYIINRNKTNLNAKVSSQPYANNQVKTVQGQTVPTVANALLSKATRQYKNRQETGNGSTSWTP
AGWHQVQNLSGEYSHAVDRGHLLGYALIGGLKGFDASTSNPENIAVQTAWANQAYSDSSTGQNYYESLVRKALDKNKRVR
YRVTLIYEGENLIPSGTHLEAKSADGSLEFNVFVPNVQEGITLDYYSGKVTVN

Nucleotide

• Length: 882 bp

>NTDB_id=479534 IBC04_RS05385 WP_011681210.1 1029448..1030329(-) (endA) [Streptococcus thermophilus strain 24740]
ATGGCAAAAAGAAAGACATCTTTGACAAATAAACAGAAACGTCAGTTAGTCACATTAATAATAGCAGCTTTGATAGCTGT
TTTAGGTTACCTAGGAACCAGTAACAAGCTCTCGCCTGATAATCCTATCAGACAAGTAGCAAGCCTAGTTTCAGGGAAAT
CTAACAAATCCATTAAATCTAATGGTTCAACAAATAGTCAGTCTACACCACAAGAGCAGCTTGCTGAGACAGTAATGACT
AGTTCAGTCAAAAGCCAACTGGGTAATTCCTTAGAATGGAATGGAGCTGGGGCCTACATTATTAATAGAAATAAGACGAA
TCTAAATGCTAAGGTATCAAGCCAACCCTATGCTAATAACCAAGTCAAAACGGTTCAAGGACAAACTGTTCCTACAGTTG
CTAATGCCTTATTAAGTAAAGCAACTAGACAGTACAAAAATCGTCAAGAAACAGGGAATGGTTCAACCTCTTGGACACCA
GCTGGATGGCACCAGGTTCAAAATTTATCAGGAGAGTATAGCCATGCCGTAGATAGAGGCCATTTGCTAGGTTATGCACT
GATAGGTGGTTTGAAAGGATTTGATGCCTCGACTTCAAATCCAGAGAATATTGCTGTTCAAACTGCTTGGGCAAATCAAG
CATATAGCGATAGTTCTACAGGCCAAAACTATTATGAAAGCCTAGTACGAAAAGCTCTGGATAAAAACAAACGTGTTCGT
TATCGTGTGACCCTGATTTATGAAGGAGAGAATCTCATTCCATCAGGAACACATCTTGAAGCTAAGTCAGCAGACGGCTC
ACTTGAGTTTAATGTCTTTGTTCCAAATGTACAAGAGGGAATTACACTAGATTACTATTCAGGAAAAGTAACGGTGAATT
GA

Domains

Predicted by InterproScan.

• DNA/RNA non-specific endonuclease (Endonuclease_NS) (101-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
endA	Streptococcus pneumoniae Rx1	72.803	81.57	0.594
endA	Streptococcus pneumoniae D39	72.803	81.57	0.594
endA	Streptococcus pneumoniae R6	72.803	81.57	0.594
endA	Streptococcus pneumoniae TIGR4	72.803	81.57	0.594