Detailed information NTG0479520

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: J4Q31_RS11440
• Genome accession: NZ_CP071918
• Coordinates: 2180120..2181217 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae strain 19A-19343
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2175120..2186217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4Q31_RS11415 (J4Q31_11415)	pgsA	2175641..2176186 (-)	546	WP_000712136.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
J4Q31_RS11420 (J4Q31_11420)	rodZ	2176197..2177018 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
J4Q31_RS11425 (J4Q31_11425)	yfmH	2177060..2178343 (-)	1284	WP_000170193.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
J4Q31_RS11430 (J4Q31_11430)	yfmF	2178340..2179590 (-)	1251	WP_000424257.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
J4Q31_RS11435 (J4Q31_11435)	yaaA	2179749..2180117 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
J4Q31_RS11440 (J4Q31_11440)	recF	2180120..2181217 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
J4Q31_RS11445 (J4Q31_11445)	guaB	2181268..2182746 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
J4Q31_RS11450 (J4Q31_11450)	trpS	2182898..2183923 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
J4Q31_RS11455 (J4Q31_11455)	-	2184129..2185751 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=479520 J4Q31_RS11440 WP_000266662.1 2180120..2181217(+) (recF) [Streptococcus pneumoniae strain 19A-19343]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=479520 J4Q31_RS11440 WP_000266662.1 2180120..2181217(+) (recF) [Streptococcus pneumoniae strain 19A-19343]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46