Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   IBC04_RS02280 Genome accession   NZ_CP061020
Coordinates   424012..424455 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 24740     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 419012..429455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC04_RS02260 (IBC04_02260) - 419536..420288 (-) 753 WP_011680801.1 NUDIX hydrolase -
  IBC04_RS02265 (IBC04_02265) - 420352..421458 (-) 1107 WP_014608024.1 AAA family ATPase -
  IBC04_RS02270 (IBC04_02270) gdhA 421802..423154 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  IBC04_RS02275 (IBC04_02275) - 423412..423822 (+) 411 WP_011680804.1 peptide deformylase -
  IBC04_RS02280 (IBC04_02280) rcrR 424012..424455 (+) 444 WP_002945408.1 MarR family transcriptional regulator Regulator
  IBC04_RS02285 (IBC04_02285) rcrP 424459..426273 (+) 1815 WP_138496668.1 ABC transporter ATP-binding protein Regulator
  IBC04_RS02290 (IBC04_02290) rcrQ 426263..428041 (+) 1779 WP_011225561.1 ABC transporter ATP-binding protein Regulator
  IBC04_RS02295 (IBC04_02295) - 428197..428568 (+) 372 WP_232981380.1 GNAT family acetyltransferase -
  IBC04_RS02300 (IBC04_02300) - 428682..428948 (+) 267 WP_207563339.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=479520 IBC04_RS02280 WP_002945408.1 424012..424455(+) (rcrR) [Streptococcus thermophilus strain 24740]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=479520 IBC04_RS02280 WP_002945408.1 424012..424455(+) (rcrR) [Streptococcus thermophilus strain 24740]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537