Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   J4Q31_RS08110 Genome accession   NZ_CP071918
Coordinates   1574678..1575274 (-) Length   198 a.a.
NCBI ID   WP_000966739.1    Uniprot ID   E8KDK4
Organism   Streptococcus pneumoniae strain 19A-19343     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1569678..1580274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4Q31_RS08090 (J4Q31_08105) - 1570608..1571312 (-) 705 WP_001055251.1 TIGR02206 family membrane protein -
  J4Q31_RS08095 (J4Q31_08110) - 1571403..1572014 (-) 612 WP_000994206.1 NUDIX hydrolase -
  J4Q31_RS08100 (J4Q31_08115) murF 1572001..1573374 (-) 1374 WP_000778689.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  J4Q31_RS08105 (J4Q31_08120) - 1573458..1574501 (-) 1044 WP_233922954.1 D-alanine--D-alanine ligase -
  J4Q31_RS08110 (J4Q31_08125) recR 1574678..1575274 (-) 597 WP_000966739.1 recombination mediator RecR Machinery gene
  J4Q31_RS08115 (J4Q31_08130) pbp2b 1575285..1577342 (-) 2058 WP_233922955.1 penicillin-binding protein 2B -
  J4Q31_RS08120 (J4Q31_08135) - 1577542..1578393 (+) 852 WP_000360334.1 MurR/RpiR family transcriptional regulator -
  J4Q31_RS08125 (J4Q31_08140) - 1578409..1579293 (-) 885 WP_233922956.1 ROK family protein -
  J4Q31_RS08130 (J4Q31_08145) - 1579311..1580228 (-) 918 WP_001281525.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21712.88 Da        Isoelectric Point: 4.4995

>NTDB_id=479474 J4Q31_RS08110 WP_000966739.1 1574678..1575274(-) (recR) [Streptococcus pneumoniae strain 19A-19343]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMPDDDVNEFAKNLLAAKRELTYCSICGRLTDEDPCSICTDPSRDQS
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=479474 J4Q31_RS08110 WP_000966739.1 1574678..1575274(-) (recR) [Streptococcus pneumoniae strain 19A-19343]
ATGCTTTATCCAACACCTATTGCTAAGTTGATTGACAGTTATTCCAAACTTCCTGGTATTGGGATTAAGACAGCAACTCG
ACTGGCCTTTTATACTATTGGAATGCCGGATGACGACGTCAATGAATTTGCAAAAAATCTTCTTGCAGCCAAGCGAGAAT
TGACCTATTGCTCTATTTGTGGACGATTAACAGATGAAGACCCGTGCTCTATCTGTACCGATCCTAGCCGTGATCAGTCT
ACGATTCTGGTCCTGGAGGATAGCCGCGATGTCGCTGCCATGGAAAATATTCAGGAATACCACGGACTTTACCATGTCTT
ACATGGTCTCATTTCACCTATGAATGGGATTAGCCCAGATGACATCAATCTTAAAAGTCTCATGACCCGCCTCATGGATA
GCGAAGTTTCAGAGGTGATTGTGGCGACTAATGCTACAGCAGATGGGGAAGCGACTTCCATGTATCTTTCCCGCTTACTC
AAGCCAGCTGGGATCAAGGTTACGCGCTTGGCACGAGGCCTCGCTGTGGGAGCAGATATCGAGTATGCGGATGAAGTGAC
CCTCTTACGGGCTATTGAAAATCGAACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E8KDK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

96.97

100

0.97
  recR Bacillus subtilis subsp. subtilis str. 168

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495