Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IBC33_RS00040 Genome accession   NZ_CP061006
Coordinates   9223..9741 (+) Length   172 a.a.
NCBI ID   WP_005721894.1    Uniprot ID   -
Organism   Lactobacillus crispatus strain lc31     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4223..14741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IBC33_RS00030 gyrA 6180..8660 (+) 2481 WP_005721040.1 DNA gyrase subunit A -
  IBC33_RS00035 rpsF 8877..9173 (+) 297 WP_005723612.1 30S ribosomal protein S6 -
  IBC33_RS00040 ssb 9223..9741 (+) 519 WP_005721894.1 single-stranded DNA-binding protein Machinery gene
  IBC33_RS00045 rpsR 9769..10005 (+) 237 WP_003549366.1 30S ribosomal protein S18 -
  IBC33_RS00050 - 10169..12190 (+) 2022 WP_005721046.1 DHH family phosphoesterase -
  IBC33_RS00055 rplI 12202..12657 (+) 456 WP_005721048.1 50S ribosomal protein L9 -
  IBC33_RS00060 dnaB 12677..14068 (+) 1392 WP_005721050.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18679.21 Da        Isoelectric Point: 4.7317

>NTDB_id=479410 IBC33_RS00040 WP_005721894.1 9223..9741(+) (ssb) [Lactobacillus crispatus strain lc31]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNASSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=479410 IBC33_RS00040 WP_005721894.1 9223..9741(+) (ssb) [Lactobacillus crispatus strain lc31]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTAGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.143

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.705

100

0.529