Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H8687_RS00040 Genome accession   NZ_CP061005
Coordinates   9223..9741 (+) Length   172 a.a.
NCBI ID   WP_013085589.1    Uniprot ID   A0A109DE21
Organism   Lactobacillus crispatus strain lc83     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4223..14741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8687_RS00030 gyrA 6180..8660 (+) 2481 WP_232805132.1 DNA gyrase subunit A -
  H8687_RS00035 rpsF 8877..9173 (+) 297 WP_005723612.1 30S ribosomal protein S6 -
  H8687_RS00040 ssb 9223..9741 (+) 519 WP_013085589.1 single-stranded DNA-binding protein Machinery gene
  H8687_RS00045 rpsR 9769..10005 (+) 237 WP_003549366.1 30S ribosomal protein S18 -
  H8687_RS00050 - 10169..12190 (+) 2022 WP_005721046.1 DHH family phosphoesterase -
  H8687_RS00055 rplI 12202..12657 (+) 456 WP_005721048.1 50S ribosomal protein L9 -
  H8687_RS00060 dnaB 12677..14068 (+) 1392 WP_005721050.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18649.18 Da        Isoelectric Point: 4.7317

>NTDB_id=479395 H8687_RS00040 WP_013085589.1 9223..9741(+) (ssb) [Lactobacillus crispatus strain lc83]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFVSCVIWRKSAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKDREARGQNGGYTPNSGNAGSQPANNFPNNGGSQGNSQTNNNQNNSQDPFSGSG
DTIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=479395 H8687_RS00040 WP_013085589.1 9223..9741(+) (ssb) [Lactobacillus crispatus strain lc83]
ATGATTAATAGAGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGTGGAATCTCGGTTGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGCCAAGGTGAGAGAGGCGCAGATTTCGTCAGCTGTGTAATTT
GGAGAAAGTCAGCAGAAAACTTCTGCAACTTTACTTCAAAGGGTTCATTAGTTGGAATTGATGGCCGAATTCAAACCAGA
AGTTATGATAATAAAGATGGGCAAAGGGTATATGTAACCGAAGTTGTTGTTGATAACTTCGCATTGCTCGAATCACGCAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGTTATACACCAAATAGTGGAAATGCTGGCAGTCAACCTGCTAACAATTTCC
CAAATAATGGCGGATCACAAGGTAATTCACAGACTAATAACAATCAAAATAATTCACAAGATCCATTTAGTGGCTCAGGT
GATACGATTGATATTTCTGATGACGATCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109DE21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.571

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.273

100

0.535