Detailed information NTG0479378

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IAG34_RS19390
• Genome accession: NZ_CP060994
• Coordinates: 325745..326605 (-)
• Length: 286 a.a.
• NCBI ID: WP_086266744.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain CAb-65
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 320745..331605

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IAG34_RS01575 (IAG34_01570)	-	321636..322946 (+)	1311	WP_086266743.1	tetratricopeptide repeat protein	-
IAG34_RS01580 (IAG34_01575)	-	323023..323349 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
IAG34_RS01585 (IAG34_01580)	rlmB	323451..324200 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IAG34_RS01590 (IAG34_01585)	-	324236..325150 (+)	915	WP_000075014.1	DMT family transporter	-
IAG34_RS01595 (IAG34_01590)	coaE	325147..325743 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
IAG34_RS19390 (IAG34_01595)	pilD	325745..326605 (-)	861	WP_086266744.1	prepilin peptidase	Machinery gene
IAG34_RS01605 (IAG34_01600)	pilC	326605..327831 (-)	1227	WP_004842682.1	type II secretion system F family protein	Machinery gene
IAG34_RS01610 (IAG34_01605)	pilB	327861..329573 (-)	1713	WP_086266745.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IAG34_RS01615 (IAG34_01610)	tpiA	329862..330656 (+)	795	WP_086266746.1	triose-phosphate isomerase	-
IAG34_RS01620 (IAG34_01615)	secG	330669..330998 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32153.54 Da
• Isoelectric Point: 7.1042

>NTDB_id=479378 IAG34_RS19390 WP_086266744.1 325745..326605(-) (pilD) [Acinetobacter baumannii strain CAb-65]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=479378 IAG34_RS19390 WP_086266744.1 325745..326605(-) (pilD) [Acinetobacter baumannii strain CAb-65]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCTCTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTTCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.301	100	0.993
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	48.106	92.308	0.444