Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IAG34_RS16745 Genome accession   NZ_CP060994
Coordinates   3401784..3402212 (-) Length   142 a.a.
NCBI ID   WP_002041507.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CAb-65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3396784..3407212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG34_RS16730 (IAG34_16725) pilX 3399413..3400231 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IAG34_RS16735 (IAG34_16730) pilW 3400228..3401229 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  IAG34_RS16740 (IAG34_16735) pilV 3401230..3401790 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IAG34_RS16745 (IAG34_16740) fimU 3401784..3402212 (-) 429 WP_002041507.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IAG34_RS16750 (IAG34_16745) ispH 3402426..3403376 (-) 951 WP_004742164.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IAG34_RS16755 (IAG34_16750) gmk 3403499..3404128 (+) 630 WP_000015937.1 guanylate kinase -
  IAG34_RS16760 (IAG34_16755) rpoZ 3404201..3404479 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IAG34_RS16765 (IAG34_16760) - 3404518..3404648 (+) 131 Protein_3281 hypothetical protein -
  IAG34_RS16770 (IAG34_16765) - 3404688..3406793 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15152.42 Da        Isoelectric Point: 9.3365

>NTDB_id=479370 IAG34_RS16745 WP_002041507.1 3401784..3402212(-) (fimU) [Acinetobacter baumannii strain CAb-65]
MVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPTSLNWQTASNNTLELK
NIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 429 bp        

>NTDB_id=479370 IAG34_RS16745 WP_002041507.1 3401784..3402212(-) (fimU) [Acinetobacter baumannii strain CAb-65]
ATGGTGACGATTGCGGTCATGGCTATTATTGCACTGATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTT
AGATGCTAATCAAAGAGACTTAATCAACACTTTATCAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTG
TTAACTTGAACTCAACAGCTTCAAATACACCCACTTCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAA
AATATAGCCGCTGATGGTACGCAAAGTTCTTTAACGACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATAT
AACTCAAGATACGCTTTTATCTATTTGTAATTCTAGAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTT
TAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(32-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1