Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   IAG34_RS16730 Genome accession   NZ_CP060994
Coordinates   3399413..3400231 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain CAb-65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3394413..3405231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG34_RS16715 (IAG34_16710) pilE 3394630..3395055 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  IAG34_RS16720 (IAG34_16715) pilY2 3395052..3395534 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  IAG34_RS16725 (IAG34_16720) pilY1 3395547..3399401 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  IAG34_RS16730 (IAG34_16725) pilX 3399413..3400231 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IAG34_RS16735 (IAG34_16730) pilW 3400228..3401229 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  IAG34_RS16740 (IAG34_16735) pilV 3401230..3401790 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IAG34_RS16745 (IAG34_16740) fimU 3401784..3402212 (-) 429 WP_002041507.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IAG34_RS16750 (IAG34_16745) ispH 3402426..3403376 (-) 951 WP_004742164.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IAG34_RS16755 (IAG34_16750) gmk 3403499..3404128 (+) 630 WP_000015937.1 guanylate kinase -
  IAG34_RS16760 (IAG34_16755) rpoZ 3404201..3404479 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IAG34_RS16765 (IAG34_16760) - 3404518..3404648 (+) 131 Protein_3281 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=479367 IAG34_RS16730 WP_000149376.1 3399413..3400231(-) (pilX) [Acinetobacter baumannii strain CAb-65]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=479367 IAG34_RS16730 WP_000149376.1 3399413..3400231(-) (pilX) [Acinetobacter baumannii strain CAb-65]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989