Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   SPN034156_RS04570 Genome accession   NC_021006
Coordinates   845371..846270 (-) Length   299 a.a.
NCBI ID   WP_000904840.1    Uniprot ID   -
Organism   Streptococcus pneumoniae SPN034156     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 840371..851270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034156_RS04550 (SPN034156_08240) rsmA 841125..841997 (-) 873 WP_001216865.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  SPN034156_RS04555 (SPN034156_08250) - 842128..842436 (-) 309 WP_000333257.1 hypothetical protein -
  SPN034156_RS04560 (SPN034156_08260) - 842429..843070 (-) 642 WP_000565535.1 ABC transporter ATP-binding protein -
  SPN034156_RS04565 (SPN034156_08270) - 843072..845102 (-) 2031 WP_000825246.1 bacteriocin-associated integral membrane family protein -
  SPN034156_RS04570 (SPN034156_08280) comR 845371..846270 (-) 900 WP_000904840.1 helix-turn-helix transcriptional regulator Regulator
  SPN034156_RS04575 (SPN034156_08290) rnmV 846342..846902 (-) 561 WP_000660011.1 ribonuclease M5 -
  SPN034156_RS04580 (SPN034156_08300) - 846902..847675 (-) 774 WP_000575636.1 TatD family hydrolase -
  SPN034156_RS04585 (SPN034156_08310) - 847980..848879 (-) 900 WP_000226474.1 DUF1542 domain-containing protein -
  SPN034156_RS04590 rpmH 849163..849297 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  SPN034156_RS04595 (SPN034156_08320) - 849705..850658 (+) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35256.06 Da        Isoelectric Point: 4.9734

>NTDB_id=47935 SPN034156_RS04570 WP_000904840.1 845371..846270(-) (comR) [Streptococcus pneumoniae SPN034156]
MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIAHRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTQIENYFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQGY
QKKPLVFMFLWKQALRVERDFSLAESFYQSSKTFAKLIGDGFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=47935 SPN034156_RS04570 WP_000904840.1 845371..846270(-) (comR) [Streptococcus pneumoniae SPN034156]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCACC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTATGATAAGAAAGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAGAAGGTAACTCAAATAGAGAATTACTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGGTTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGTAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGAAGCTAATTGGAGATGGATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

37.801

97.324

0.368
  comR Streptococcus suis 05ZYH33

37.801

97.324

0.368
  comR Streptococcus mutans UA159

37.075

98.328

0.365

Multiple sequence alignment