Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IAG34_RS01145 Genome accession   NZ_CP060994
Coordinates   232728..234149 (-) Length   473 a.a.
NCBI ID   WP_024432847.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain CAb-65     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 227728..239149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAG34_RS01130 (IAG34_01130) lptG 228781..229851 (+) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -
  IAG34_RS01135 (IAG34_01135) gpmI 229977..231524 (+) 1548 WP_086266937.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IAG34_RS01140 (IAG34_01140) - 231540..232724 (+) 1185 WP_004842752.1 S41 family peptidase -
  IAG34_RS01145 (IAG34_01145) pilR 232728..234149 (-) 1422 WP_024432847.1 sigma-54-dependent transcriptional regulator Regulator
  IAG34_RS01150 (IAG34_01150) pilS 234174..235742 (-) 1569 WP_001160335.1 sensor histidine kinase Regulator
  IAG34_RS01155 (IAG34_01155) - 235753..236388 (-) 636 WP_000633799.1 response regulator -
  IAG34_RS01160 (IAG34_01160) pbpG 236601..237647 (+) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IAG34_RS01165 (IAG34_01165) thrC 237754..238893 (-) 1140 WP_000063593.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53023.24 Da        Isoelectric Point: 6.9051

>NTDB_id=479336 IAG34_RS01145 WP_024432847.1 232728..234149(-) (pilR) [Acinetobacter baumannii strain CAb-65]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGIDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEHDAAENALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWETPPKQLTEAAKTYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPFTSAAQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=479336 IAG34_RS01145 WP_024432847.1 232728..234149(-) (pilR) [Acinetobacter baumannii strain CAb-65]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGACGCATGTT
TAACCGACTTAAACCTACCCGATGGGAGCGGGATAGATTTAGTTAAACATGTCTCTCAAAATTATACTAATACTCCCATT
GCCGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGCATGATGCTGCCGAGAATG
CGTTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATCCAGCAGCTACGCATCGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCGGTATTTGTTACTGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCCAATTTGGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACCGAACTCATGGAAAGTGAGCTTTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGTGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGACGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGATTTAGATTTATTGGTTAGACAGGGCAAATTCC
GTCAAGATTTATTCTTCCGTATTCACGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTGGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGCCACCTAAACAATTAACAGAAGCGGCCAAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGACG
CCACCATAGATATATCTCATTTACATCCTGCTCCTCTAAGAGCGAATATTTCTAATCCTTTTACTTCGGCTGCTCAAAGC
ATACAAACCACTGTAGCAGCTCCCCAAGTCGTAAAAAAATTACCAAGTGAAGGCTTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

98.52

100

0.985
  pilR Pseudomonas aeruginosa PAK

50.763

97.04

0.493