Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SPN034156_RS03950 Genome accession   NC_021006
Coordinates   740422..741132 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae SPN034156     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 735422..746132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034156_RS03930 (SPN034156_07270) - 735963..736211 (-) 249 WP_000364990.1 YneF family protein -
  SPN034156_RS03940 (SPN034156_07280) treC 736467..738092 (-) 1626 WP_000171222.1 alpha,alpha-phosphotrehalase -
  SPN034156_RS03945 (SPN034156_07290) treP 738270..740237 (-) 1968 WP_000514329.1 PTS system trehalose-specific EIIBC component -
  SPN034156_RS03950 (SPN034156_07300) treR 740422..741132 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  SPN034156_RS11255 (SPN034156_07310) - 741287..742613 (+) 1327 Protein_756 transposase -
  SPN034156_RS03970 (SPN034156_07320) - 742688..743614 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein -
  SPN034156_RS03975 (SPN034156_07330) amiE 743625..744692 (-) 1068 WP_000159554.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  SPN034156_RS03980 (SPN034156_07340) amiD 744701..745627 (-) 927 WP_000103701.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=47922 SPN034156_RS03950 WP_000760673.1 740422..741132(+) (treR) [Streptococcus pneumoniae SPN034156]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=47922 SPN034156_RS03950 WP_000760673.1 740422..741132(+) (treR) [Streptococcus pneumoniae SPN034156]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment