Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NMBG2136_RS08535 Genome accession   NC_017513
Coordinates   1618402..1618866 (-) Length   154 a.a.
NCBI ID   WP_014580830.1    Uniprot ID   -
Organism   Neisseria meningitidis G2136     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1613402..1623866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBG2136_RS08510 (NMBG2136_1523) - 1614686..1614958 (-) 273 WP_014580829.1 ACT domain-containing protein -
  NMBG2136_RS08515 (NMBG2136_1524) - 1615084..1615821 (-) 738 WP_002220248.1 toxin-antitoxin system YwqK family antitoxin -
  NMBG2136_RS08520 (NMBG2136_1525) prmB 1616102..1617001 (-) 900 WP_002235090.1 50S ribosomal protein L3 N(5)-glutamine methyltransferase -
  NMBG2136_RS08525 (NMBG2136_1526) - 1617146..1617739 (+) 594 WP_002226163.1 hypothetical protein -
  NMBG2136_RS08530 (NMBG2136_1527) - 1617851..1618288 (+) 438 Protein_1586 HK97 family phage prohead protease -
  NMBG2136_RS08535 (NMBG2136_1528) comE 1618402..1618866 (-) 465 WP_014580830.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16519.75 Da        Isoelectric Point: 10.9695

>NTDB_id=47919 NMBG2136_RS08535 WP_014580830.1 1618402..1618866(-) (comE) [Neisseria meningitidis G2136]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPALPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=47919 NMBG2136_RS08535 WP_014580830.1 1618402..1618866(-) (comE) [Neisseria meningitidis G2136]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCGGCAAAACCGGCTCTGCCCGCAGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74
  comE Neisseria gonorrhoeae MS11

93.443

79.221

0.74

Multiple sequence alignment