Detailed information NTG0479154

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: JN057_RS10960
• Genome accession: NZ_CP071871
• Coordinates: 2118453..2119550 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae strain BVJ1JL
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2113453..2124550

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JN057_RS10935 (JN057_02242)	pgsA	2113974..2114519 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
JN057_RS10940 (JN057_02243)	rodZ	2114530..2115351 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
JN057_RS10945 (JN057_02244)	yfmH	2115393..2116676 (-)	1284	WP_000170194.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
JN057_RS10950 (JN057_02245)	yfmF	2116673..2117923 (-)	1251	WP_000424262.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
JN057_RS10955 (JN057_02246)	yaaA	2118082..2118450 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
JN057_RS10960 (JN057_02247)	recF	2118453..2119550 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
JN057_RS10965 (JN057_02248)	guaB	2119601..2121079 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
JN057_RS10970 (JN057_02249)	trpS	2121231..2122256 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
JN057_RS10975 (JN057_02250)	-	2122462..2124084 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=479154 JN057_RS10960 WP_000266662.1 2118453..2119550(+) (recF) [Streptococcus pneumoniae strain BVJ1JL]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=479154 JN057_RS10960 WP_000266662.1 2118453..2119550(+) (recF) [Streptococcus pneumoniae strain BVJ1JL]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46