Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   SPN034156_RS03025 Genome accession   NC_021006
Coordinates   570111..570707 (-) Length   198 a.a.
NCBI ID   WP_000966743.1    Uniprot ID   P0CB76
Organism   Streptococcus pneumoniae SPN034156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 565111..575707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPN034156_RS03005 (SPN034156_05520) - 566042..566746 (-) 705 WP_001055254.1 TIGR02206 family membrane protein -
  SPN034156_RS03010 (SPN034156_05530) - 566837..567448 (-) 612 WP_000804588.1 NUDIX hydrolase -
  SPN034156_RS03015 (SPN034156_05540) murF 567435..568808 (-) 1374 WP_000778706.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  SPN034156_RS03020 (SPN034156_05550) - 568892..569935 (-) 1044 WP_000814650.1 D-alanine--D-alanine ligase -
  SPN034156_RS03025 (SPN034156_05560) recR 570111..570707 (-) 597 WP_000966743.1 recombination mediator RecR Machinery gene
  SPN034156_RS03030 (SPN034156_05570) pbp2b 570718..572775 (-) 2058 WP_001829432.1 penicillin-binding protein 2B -
  SPN034156_RS03035 (SPN034156_05580) - 572975..573826 (+) 852 WP_000360333.1 SIS domain-containing protein -
  SPN034156_RS03040 (SPN034156_05590) - 573842..574726 (-) 885 WP_000222980.1 ROK family protein -
  SPN034156_RS03045 (SPN034156_05600) - 574744..575661 (-) 918 WP_001281507.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21688.86 Da        Isoelectric Point: 4.5622

>NTDB_id=47915 SPN034156_RS03025 WP_000966743.1 570111..570707(-) (recR) [Streptococcus pneumoniae SPN034156]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=47915 SPN034156_RS03025 WP_000966743.1 570111..570707(-) (recR) [Streptococcus pneumoniae SPN034156]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACGATCCTTGTTCTATCTGTACTGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
TCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCGATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0CB76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

100

100

1
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment