Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   JN057_RS02655 Genome accession   NZ_CP071871
Coordinates   503220..504269 (+) Length   349 a.a.
NCBI ID   WP_000653768.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BVJ1JL     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 498220..509269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JN057_RS02625 (JN057_00543) - 499120..499473 (+) 354 WP_000115730.1 hypothetical protein -
  JN057_RS02630 (JN057_00544) dnaJ 499678..500814 (+) 1137 WP_001836079.1 molecular chaperone DnaJ -
  JN057_RS02635 (JN057_00545) - 501136..501555 (-) 420 WP_208093497.1 hypothetical protein -
  JN057_RS02640 (JN057_00546) - 501717..502004 (-) 288 WP_000777760.1 hypothetical protein -
  JN057_RS02645 (JN057_00547) - 502014..502424 (-) 411 WP_001278301.1 HIT family protein -
  JN057_RS02650 (JN057_00548) pptA 502492..503223 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  JN057_RS02655 (JN057_00549) pptB 503220..504269 (+) 1050 WP_000653768.1 ABC transporter permease Regulator
  JN057_RS02660 (JN057_00550) - 504437..504766 (-) 330 WP_000132583.1 hypothetical protein -
  JN057_RS02665 (JN057_00551) - 505043..505381 (+) 339 WP_000682136.1 LytTR family DNA-binding domain-containing protein -
  JN057_RS02670 (JN057_00552) comE/blpR 505386..506123 (+) 738 WP_001219137.1 response regulator transcription factor Regulator
  JN057_RS02675 (JN057_00553) - 506137..507477 (+) 1341 WP_001099894.1 sensor histidine kinase -
  JN057_RS02680 (JN057_00554) blpC 507521..507676 (-) 156 WP_000358812.1 quorum-sensing system pheromone BlpC -
  JN057_RS02685 (JN057_00555) - 507733..509094 (-) 1362 WP_001069063.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=479064 JN057_RS02655 WP_000653768.1 503220..504269(+) (pptB) [Streptococcus pneumoniae strain BVJ1JL]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVEVVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=479064 JN057_RS02655 WP_000653768.1 503220..504269(+) (pptB) [Streptococcus pneumoniae strain BVJ1JL]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGTGTCAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAAGTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467