Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   NMBG2136_RS01555 Genome accession   NC_017513
Coordinates   278647..279345 (+) Length   232 a.a.
NCBI ID   WP_002224844.1    Uniprot ID   Q9K189
Organism   Neisseria meningitidis G2136     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 273647..284345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBG2136_RS01535 (NMBG2136_0276) trpC 274969..275751 (-) 783 WP_002226010.1 indole-3-glycerol phosphate synthase TrpC -
  NMBG2136_RS01540 (NMBG2136_0277) - 275802..276758 (-) 957 WP_002226011.1 YheT family hydrolase -
  NMBG2136_RS01545 (NMBG2136_0278) murJ 276891..278429 (-) 1539 WP_002226012.1 murein biosynthesis integral membrane protein MurJ -
  NMBG2136_RS01550 - 278429..278620 (-) 192 WP_002260368.1 hypothetical protein -
  NMBG2136_RS01555 (NMBG2136_0279) dsbA1 278647..279345 (+) 699 WP_002224844.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  NMBG2136_RS01560 (NMBG2136_0280) amgK 279402..280406 (-) 1005 WP_002221934.1 N-acetylmuramate/N-acetylglucosamine kinase AmgK -
  NMBG2136_RS01565 (NMBG2136_0281) - 280476..282884 (+) 2409 WP_041423513.1 LPS-assembly protein LptD -
  NMBG2136_RS01570 (NMBG2136_0282) - 282989..284068 (+) 1080 WP_041423514.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25249.83 Da        Isoelectric Point: 5.6277

>NTDB_id=47894 NMBG2136_RS01555 WP_002224844.1 278647..279345(+) (dsbA1) [Neisseria meningitidis G2136]
MKSRHLALGVAALFALAACDSKVQTSVPADSAPAASAAAAPAGLVEGQNYTVLANPIPQQQAGKVEVLEFFGYFCPHCAH
LEPVLSKHAKSFKDDMYLRTEHVVWQKEMLTLARLAAAVDMAAADSKDVANSHIFDAMVNQKIKLQNPEVLKKWLGEQTA
FDGKKVLAAYESPESQARADKMQELTETFQIDGTPTVIVGGKYKVEFADWESGMNTIDLLADKVREEQKAAQ

Nucleotide


Download         Length: 699 bp        

>NTDB_id=47894 NMBG2136_RS01555 WP_002224844.1 278647..279345(+) (dsbA1) [Neisseria meningitidis G2136]
ATGAAATCCAGACACCTCGCCCTCGGCGTTGCCGCCCTGTTCGCCCTTGCCGCGTGCGACAGCAAAGTCCAAACCAGCGT
CCCCGCCGACAGCGCGCCTGCCGCTTCGGCAGCCGCCGCCCCGGCAGGGCTGGTCGAAGGGCAAAACTATACCGTCCTTG
CCAACCCGATTCCCCAACAGCAGGCAGGCAAAGTCGAAGTCCTTGAGTTTTTCGGCTATTTCTGTCCGCACTGCGCCCAC
CTCGAACCTGTTTTAAGCAAACACGCCAAGTCTTTTAAAGACGATATGTACCTGCGTACCGAACACGTCGTCTGGCAGAA
AGAAATGCTGACGCTGGCACGCCTCGCCGCCGCCGTCGATATGGCTGCCGCCGACAGCAAAGATGTGGCGAACAGCCATA
TTTTCGATGCGATGGTCAACCAAAAAATCAAGCTGCAAAATCCGGAAGTCCTCAAAAAATGGCTGGGCGAACAAACCGCC
TTTGACGGCAAAAAAGTCCTTGCCGCCTACGAGTCCCCCGAAAGCCAGGCGCGCGCCGACAAAATGCAGGAGCTGACCGA
AACCTTCCAAATCGACGGTACGCCCACGGTTATCGTCGGCGGTAAATATAAAGTTGAATTTGCCGACTGGGAGTCCGGTA
TGAACACCATCGACCTTTTGGCGGACAAAGTACGCGAAGAACAAAAAGCCGCGCAGTAA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(63-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3A3T
  PDB 3DVW
  PDB 3HZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

100

100

1
  dsbA2 Neisseria meningitidis MC58

76.19

81.466

0.621

Multiple sequence alignment