Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JZM58_RS21695 Genome accession   NZ_CP071797
Coordinates   4921538..4921873 (-) Length   111 a.a.
NCBI ID   WP_207983581.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain YK-310     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4916538..4926873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZM58_RS21670 (JZM58_21670) - 4917425..4917592 (+) 168 WP_007950938.1 DUF2897 family protein -
  JZM58_RS21675 (JZM58_21675) - 4917638..4918489 (-) 852 WP_207983577.1 DUF1989 domain-containing protein -
  JZM58_RS21680 (JZM58_21680) - 4918665..4919222 (+) 558 WP_207983578.1 TetR/AcrR family transcriptional regulator -
  JZM58_RS21685 (JZM58_21685) fabF 4919219..4920493 (-) 1275 WP_207983579.1 beta-ketoacyl-ACP synthase II -
  JZM58_RS21690 (JZM58_21690) - 4920526..4921320 (-) 795 WP_207983580.1 SDR family oxidoreductase -
  JZM58_RS21695 (JZM58_21695) comEA 4921538..4921873 (-) 336 WP_207983581.1 helix-hairpin-helix domain-containing protein Machinery gene
  JZM58_RS21700 (JZM58_21700) - 4921987..4923975 (-) 1989 WP_207983582.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  JZM58_RS21705 (JZM58_21705) - 4924094..4925107 (-) 1014 WP_207986245.1 glycosyltransferase family 4 protein -
  JZM58_RS21710 (JZM58_21710) - 4925107..4926093 (-) 987 WP_243459105.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11711.52 Da        Isoelectric Point: 6.3261

>NTDB_id=478911 JZM58_RS21695 WP_207983581.1 4921538..4921873(-) (comEA) [Pseudomonas fluorescens strain YK-310]
MRTGFFYSLVFALLTSTSIAVIAAPAVAPKVDGTPLVIDVNAPSKNLKVDLNNADAATLQKELAGVGEAKAKAIVAYRET
NGPFASVDELLEVKGIGKAILDRNRDKLEVN

Nucleotide


Download         Length: 336 bp        

>NTDB_id=478911 JZM58_RS21695 WP_207983581.1 4921538..4921873(-) (comEA) [Pseudomonas fluorescens strain YK-310]
ATGCGTACCGGCTTTTTCTACTCCCTGGTATTTGCCCTTCTCACCAGCACCTCGATCGCCGTGATTGCTGCGCCAGCAGT
AGCTCCGAAAGTGGATGGAACACCGCTGGTCATTGACGTCAATGCCCCGTCGAAAAACTTGAAAGTCGATCTCAACAATG
CCGATGCAGCCACCTTGCAAAAGGAACTGGCAGGAGTGGGCGAGGCCAAGGCGAAAGCGATTGTTGCTTATCGTGAAACA
AACGGGCCGTTTGCATCCGTGGATGAATTGCTGGAAGTGAAGGGGATCGGCAAGGCGATCCTGGATCGCAATCGCGACAA
ACTGGAAGTGAACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

35.659

100

0.414
  comEA/comE1 Glaesserella parasuis strain SC1401

40.952

94.595

0.387