Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H8B22_RS03610 Genome accession   NZ_CP060820
Coordinates   770360..771838 (+) Length   492 a.a.
NCBI ID   WP_187712758.1    Uniprot ID   -
Organism   Agrilutibacter terrestris strain II4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 765360..776838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8B22_RS03595 (H8B22_03595) sucD 766416..767291 (-) 876 WP_187712755.1 succinate--CoA ligase subunit alpha -
  H8B22_RS03600 (H8B22_03600) sucC 767306..768472 (-) 1167 WP_187712756.1 ADP-forming succinate--CoA ligase subunit beta -
  H8B22_RS03605 (H8B22_03605) - 768664..770262 (+) 1599 WP_187712757.1 PAS domain-containing sensor histidine kinase -
  H8B22_RS03610 (H8B22_03610) pilR 770360..771838 (+) 1479 WP_187712758.1 sigma-54 dependent transcriptional regulator Regulator
  H8B22_RS14975 (H8B22_03615) - 772132..772243 (+) 112 Protein_703 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  H8B22_RS03620 (H8B22_03620) - 772714..774639 (+) 1926 WP_187712759.1 lipopolysaccharide assembly protein LapB -
  H8B22_RS03625 (H8B22_03625) - 774678..775790 (+) 1113 WP_225876268.1 glycosyltransferase family 4 protein -
  H8B22_RS03630 (H8B22_03630) - 775787..776707 (+) 921 WP_187712761.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 53186.01 Da        Isoelectric Point: 7.0699

>NTDB_id=478609 H8B22_RS03610 WP_187712758.1 770360..771838(+) (pilR) [Agrilutibacter terrestris strain II4]
MTETRSALIVDDERDIRELLVMTLGRMGLRCDTAATLGDARAQLARNAYDLCLTDMRLPDGSGMDLIAEINQKHPNTPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLPVLRDLVRHALDLREKRRTPAQADPVAARFFGDSPAIATLRQTIAKVARSQ
APVYIVGESGVGKELTARTIHEQGPRANGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAADGGTLFLDEV
AELPLAMQVKLLRAIQEKSIRPVGANSEVNVDVRILSATHKNLAALTEDGRFRHDLYYRINVIELRVPPLRERLDDLPGL
AERVLTRLAAAQSRTIPTLAPDALEALRAHPFPGNVRELENILERALALADGDLIEAGDLRLPKAPPATSAAIAAGHSPV
FGAAPATLPQASAPHMPPLDPRATGTHAALDPRALNPRDTASSRLPEYIEAMERQAIEQALQENRFNKTRTAAALGITFR
ALRYKLKKLGID

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=478609 H8B22_RS03610 WP_187712758.1 770360..771838(+) (pilR) [Agrilutibacter terrestris strain II4]
ATGACGGAAACACGCAGTGCACTGATAGTCGACGACGAGCGCGATATCCGCGAGCTGCTCGTCATGACGCTTGGCCGCAT
GGGCCTGCGTTGCGACACCGCCGCCACCCTGGGCGACGCACGCGCGCAGCTGGCGCGCAACGCCTATGACCTGTGCCTCA
CCGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGATCGCCGAGATCAACCAGAAGCACCCCAACACCCCGGTCGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCGGCGGTGGAGGCCTTGAAGGCCGGCGCCTTCGATTTCGTCGCCAAGCCCGT
CGACCTGCCGGTGCTGCGCGACCTCGTGCGCCACGCCCTGGACCTGCGCGAGAAGCGCCGCACCCCCGCCCAGGCCGACC
CGGTGGCCGCACGCTTCTTCGGCGATTCCCCGGCCATCGCGACGCTGCGCCAGACCATCGCCAAGGTTGCGCGCAGCCAG
GCCCCGGTCTACATCGTCGGCGAGTCCGGCGTGGGCAAGGAACTCACTGCCCGCACCATCCACGAGCAGGGCCCGCGCGC
CAACGGCCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGCGCCCACGCCGACAAGCCGGGCCTGTTCCAGGCTGCCGACGGCGGCACCCTGTTCCTGGACGAAGTC
GCCGAGCTGCCGCTGGCCATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGATCCGCCCGGTCGGCGCGAATTC
CGAAGTCAACGTCGACGTCCGCATCCTCTCGGCCACGCACAAGAACCTCGCGGCCCTGACCGAAGACGGCCGCTTCCGCC
ACGACCTGTACTACCGCATCAACGTCATCGAGCTGCGCGTGCCACCGCTGCGCGAACGCCTCGACGACCTGCCCGGCCTG
GCCGAGCGCGTGCTGACCCGCCTCGCCGCCGCCCAGAGCCGGACGATCCCGACGCTGGCGCCGGATGCACTCGAGGCGCT
GCGCGCCCATCCGTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAGCGCGCCCTCGCCCTCGCCGACGGCGACC
TGATCGAAGCCGGCGACCTGCGCCTGCCCAAGGCCCCGCCGGCCACCAGCGCCGCAATCGCCGCCGGCCACTCGCCCGTA
TTCGGCGCCGCCCCGGCCACACTGCCGCAGGCGTCCGCCCCGCACATGCCCCCACTGGACCCGCGCGCCACCGGCACCCA
CGCCGCCCTCGACCCGCGCGCCCTGAACCCCCGCGACACCGCCAGCAGCCGCCTGCCCGAATACATCGAAGCGATGGAGC
GCCAGGCGATCGAACAGGCGCTGCAGGAAAACCGCTTCAACAAGACCCGCACGGCGGCGGCGCTGGGGATCACGTTCCGG
GCGTTGCGGTACAAGCTGAAAAAGCTTGGGATTGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-305)

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(449-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.607

99.187

0.581
  pilR Acinetobacter baumannii strain A118

44.969

98.984

0.445