Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IAQ69_RS13095 Genome accession   NZ_CP060811
Coordinates   2734284..2734919 (+) Length   211 a.a.
NCBI ID   WP_034701455.1    Uniprot ID   A0A7T8AQK4
Organism   Acinetobacter variabilis strain XM9F202-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2729284..2739919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAQ69_RS13085 (IAQ69_13080) - 2731406..2732218 (-) 813 WP_179992767.1 NAD-dependent epimerase/dehydratase family protein -
  IAQ69_RS13090 (IAQ69_13085) recG 2732252..2734297 (+) 2046 WP_179992766.1 ATP-dependent DNA helicase RecG -
  IAQ69_RS13095 (IAQ69_13090) comF 2734284..2734919 (+) 636 WP_034701455.1 ComF family protein Machinery gene
  IAQ69_RS13100 (IAQ69_13095) - 2734921..2735322 (-) 402 WP_166135917.1 NUDIX hydrolase -
  IAQ69_RS13105 (IAQ69_13100) - 2735351..2735941 (-) 591 WP_034701503.1 TIGR00730 family Rossman fold protein -
  IAQ69_RS13110 (IAQ69_13105) - 2736094..2737107 (+) 1014 WP_004786961.1 CorA family divalent cation transporter -
  IAQ69_RS13115 (IAQ69_13110) - 2737431..2737721 (-) 291 WP_159122637.1 lipid asymmetry maintenance protein MlaB -
  IAQ69_RS13120 (IAQ69_13115) - 2737734..2738369 (-) 636 WP_004786965.1 phospholipid-binding protein MlaC -
  IAQ69_RS13125 (IAQ69_13120) - 2738388..2739065 (-) 678 WP_180168065.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IAQ69_RS13130 (IAQ69_13125) mlaE 2739065..2739844 (-) 780 WP_004786970.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24452.72 Da        Isoelectric Point: 9.4181

>NTDB_id=478543 IAQ69_RS13095 WP_034701455.1 2734284..2734919(+) (comF) [Acinetobacter variabilis strain XM9F202-2]
MPMFKLLQQGKLWLNRLQPCQLCQTDYQNLHSVCQDCWQQLPWAHQTIQRQEMQFQVACDYAYPMDRLIQLFKYEQKLHL
EPLLAGALLTLKFPKVSAVVPMPISTERLVERGYNQSLLLAKHVAKHLQVPVWQPIERLKQHSQKGLSRLERIEDIEAQF
RVTISSKVRYRKVLIIDDVVTTGSSIRALSQQLEKLGCQQIYAACLAGAKL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=478543 IAQ69_RS13095 WP_034701455.1 2734284..2734919(+) (comF) [Acinetobacter variabilis strain XM9F202-2]
ATGCCTATGTTTAAGCTGTTACAACAGGGTAAACTCTGGCTGAATCGTTTACAGCCTTGTCAGCTGTGCCAGACAGATTA
TCAAAACCTGCATTCTGTCTGTCAGGATTGCTGGCAACAGTTACCTTGGGCACATCAGACTATTCAGCGTCAGGAAATGC
AGTTTCAGGTGGCTTGTGACTATGCCTACCCGATGGATCGCCTGATTCAATTATTTAAATATGAGCAGAAGCTGCATCTG
GAACCATTATTGGCAGGTGCATTACTAACCTTAAAATTTCCTAAAGTCAGTGCAGTGGTTCCTATGCCGATTTCAACCGA
ACGACTGGTTGAACGTGGCTATAATCAATCTTTGTTGCTGGCCAAGCATGTAGCTAAACACTTGCAAGTTCCCGTCTGGC
AACCAATTGAACGACTCAAGCAACATTCACAAAAAGGCTTAAGCCGTCTGGAACGTATCGAAGATATTGAAGCCCAGTTC
AGGGTCACTATCTCTTCAAAAGTCCGTTATCGTAAGGTTTTAATTATTGATGATGTGGTTACGACTGGCAGCTCAATTCG
AGCTTTGAGCCAGCAACTGGAAAAACTGGGCTGTCAGCAGATTTATGCCGCCTGTCTGGCGGGAGCCAAACTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T8AQK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.87

98.104

0.597
  comF Acinetobacter baumannii D1279779

60.386

98.104

0.592