Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NMAA_RS00105 Genome accession   NC_017512
Coordinates   17073..17411 (-) Length   112 a.a.
NCBI ID   WP_002246553.1    Uniprot ID   -
Organism   Neisseria meningitidis WUE 2594     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 12073..22411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMAA_RS00085 (NMAA_0015) gnd 12182..13630 (-) 1449 WP_002247197.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  NMAA_RS00095 (NMAA_0016) lpxC 14816..15739 (-) 924 WP_002246555.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NMAA_RS00100 (NMAA_ps001) - 16764..17080 (-) 317 Protein_16 pilin -
  NMAA_RS00105 (NMAA_ps002) pilE 17073..17411 (-) 339 WP_002246553.1 pilin Machinery gene
  NMAA_RS15185 - 17604..17813 (-) 210 Protein_18 pilin -
  NMAA_RS00115 (NMAA_0017) - 17842..18171 (-) 330 WP_002216146.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  NMAA_RS00120 (NMAA_0018) - 18249..18467 (-) 219 WP_002246551.1 DUF2061 domain-containing protein -
  NMAA_RS00125 (NMAA_0019) - 18589..19542 (+) 954 WP_002246550.1 D-2-hydroxyacid dehydrogenase -
  NMAA_RS00130 (NMAA_0020) metG 19616..21673 (-) 2058 WP_002218458.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 11942.22 Da        Isoelectric Point: 9.6561

>NTDB_id=47842 NMAA_RS00105 WP_002246553.1 17073..17411(-) (pilE) [Neisseria meningitidis WUE 2594]
MTGFNDAAGVASSPSDIKGKYVQKVEVAKGVITAQMASSNVNNEIKGKKLSLWAKRQNGSVKWFCGQPVQRDKADADADA
VTADTAANKKIDTNHSHEPTSRHSRESGNDGI

Nucleotide


Download         Length: 339 bp        

>NTDB_id=47842 NMAA_RS00105 WP_002246553.1 17073..17411(-) (pilE) [Neisseria meningitidis WUE 2594]
ATGACGGGATTTAATGATGCCGCCGGCGTGGCATCCTCCCCCTCCGACATCAAAGGCAAATATGTTCAGAAAGTTGAAGT
CGCAAAAGGCGTCATTACCGCCCAAATGGCTTCAAGCAACGTAAACAATGAAATCAAAGGCAAAAAACTCTCCCTGTGGG
CCAAGCGTCAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTCAGCGCGACAAAGCCGACGCCGACGCCGACGCC
GTTACCGCCGACACCGCCGCCAACAAGAAGATCGACACCAATCATTCCCACGAACCTACATCCCGTCATTCCCGCGAAAG
TGGGAATGACGGGATTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(7-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

70.33

81.25

0.571
  pilE Neisseria gonorrhoeae MS11

68.132

81.25

0.554

Multiple sequence alignment