Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J1N58_RS09685 Genome accession   NZ_CP071697
Coordinates   2029148..2029642 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0ABV2ENX4
Organism   Streptococcus suis strain 1112S     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2024148..2034642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS09670 (J1N58_09670) - 2027023..2027967 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  J1N58_RS09675 (J1N58_09675) - 2027983..2028639 (+) 657 WP_012027735.1 DUF1129 domain-containing protein -
  J1N58_RS09680 (J1N58_09680) rpsR 2028876..2029115 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  J1N58_RS09685 (J1N58_09685) ssbA 2029148..2029642 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  J1N58_RS09690 (J1N58_09690) rpsF 2029654..2029944 (-) 291 WP_024418487.1 30S ribosomal protein S6 -
  J1N58_RS09695 (J1N58_09695) - 2030116..2031105 (-) 990 WP_029177384.1 lipoate--protein ligase -
  J1N58_RS09700 (J1N58_09700) lpdA 2031206..2032966 (-) 1761 WP_029177383.1 dihydrolipoyl dehydrogenase -
  J1N58_RS09705 (J1N58_09705) - 2033235..2034623 (-) 1389 WP_024418490.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=478412 J1N58_RS09685 WP_002942409.1 2029148..2029642(-) (ssbA) [Streptococcus suis strain 1112S]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=478412 J1N58_RS09685 WP_002942409.1 2029148..2029642(-) (ssbA) [Streptococcus suis strain 1112S]
ATGATAAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTACAACTCACCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366