Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   J1N58_RS09665 Genome accession   NZ_CP071697
Coordinates   2023345..2026170 (-) Length   941 a.a.
NCBI ID   WP_207560316.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2018345..2031170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS09645 (J1N58_09645) - 2018597..2018944 (-) 348 WP_024378927.1 hypothetical protein -
  J1N58_RS09650 (J1N58_09650) - 2018957..2020045 (-) 1089 WP_207560314.1 hypothetical protein -
  J1N58_RS09655 (J1N58_09655) - 2020103..2023003 (-) 2901 WP_207560315.1 G5 domain-containing protein -
  J1N58_RS09660 (J1N58_09660) - 2023142..2023315 (+) 174 WP_002942417.1 YlcI/YnfO family protein -
  J1N58_RS09665 (J1N58_09665) uvrA 2023345..2026170 (-) 2826 WP_207560316.1 excinuclease ABC subunit UvrA Machinery gene
  J1N58_RS09670 (J1N58_09670) - 2027023..2027967 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  J1N58_RS09675 (J1N58_09675) - 2027983..2028639 (+) 657 WP_012027735.1 DUF1129 domain-containing protein -
  J1N58_RS09680 (J1N58_09680) rpsR 2028876..2029115 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  J1N58_RS09685 (J1N58_09685) ssbA 2029148..2029642 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  J1N58_RS09690 (J1N58_09690) rpsF 2029654..2029944 (-) 291 WP_024418487.1 30S ribosomal protein S6 -
  J1N58_RS09695 (J1N58_09695) - 2030116..2031105 (-) 990 WP_029177384.1 lipoate--protein ligase -

Sequence

Protein


Download         Length: 941 a.a.        Molecular weight: 103911.06 Da        Isoelectric Point: 6.1096

>NTDB_id=478411 J1N58_RS09665 WP_207560316.1 2023345..2026170(-) (uvrA) [Streptococcus suis strain 1112S]
MQENIVIHGARAHNLKNIDVTIPREKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMDKPDVDSIEGL
SPAISIDQKTTSRNPRSTVGTATEINDYLRLLYARVGVPYCINGHGAIAASSVEQIVDEVLELPERQRLQILAPIVRKKK
GQHKTIFEKVQKDGYVRVRVNGDVYDVSEVPELSKSKAHNIEVVVDRIVIKEGIRSRLFDSIEAALRIADGYVIIDTMDE
KELLFSEYYACPVCGFTVPELEPRLFSFNAPFGSCSDCDGLGMKLEVDTDLIVPDASKTLREGALAPWNPISSNYYPQML
EQAMNHFGVDMDKPFEELTEEEKNLIFNGSDGKEFHFHYENEFGGVRDIDIPFEGLITNINRRYRETNSDYTRTVMKTYM
NELTCGTCHGYRLNDQALSVKVGGEQGLHIGQLSDLSVADHLQVIEHLTLSENEATIATPIVKEIKDRLSFLNNVGLNYL
TLSRAAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLI
DIGPGAGVFGGEIVASGTPVQVAKNKKSITGQYLSGKREIPVPLERRVGNGRFLEVTGAKENNLQDVTVRFPLGKFVAVT
GVSGSGKSTLVNSILKKAIAQKLNRNSDKPGKFKSISGIEHLDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVFVPCEVCHGHRYNSETLEVHYKEKNIAQVLDMTVNDAVEFF
KHIPKIERKLRTIQDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTEDIAQLLKVLARFVD
DGNTVLVIEHNLDVIKTADHIIDMGPEGGVGGGTVVATGTPEEVADNPASFTGQYLKTKLK

Nucleotide


Download         Length: 2826 bp        

>NTDB_id=478411 J1N58_RS09665 WP_207560316.1 2023345..2026170(-) (uvrA) [Streptococcus suis strain 1112S]
ATGCAAGAAAATATTGTGATTCATGGGGCGCGTGCCCATAATTTGAAAAATATTGATGTGACCATTCCGCGTGAGAAGTT
GGTGGTGGTGACTGGTTTGTCGGGGTCTGGTAAGTCGAGTTTGGCTTTTGATACCTTGTATGCCGAGGGTCAACGTCGCT
ACGTAGAGTCTTTGTCTGCCTATGCTCGTCAGTTCTTGGGCAACATGGATAAGCCTGATGTGGATTCCATAGAGGGTCTC
AGCCCTGCTATTTCCATAGACCAAAAAACAACCTCGCGGAACCCGCGTTCAACGGTTGGGACGGCGACGGAAATCAATGA
CTATCTCCGCCTGCTCTATGCTCGAGTTGGGGTGCCTTATTGTATCAATGGGCATGGGGCGATTGCGGCTTCTTCGGTGG
AGCAGATTGTCGATGAGGTCTTGGAATTGCCAGAACGCCAGCGTTTGCAGATTCTAGCACCGATTGTGCGGAAGAAAAAG
GGTCAGCACAAGACCATTTTTGAGAAGGTGCAGAAGGACGGCTATGTTCGGGTACGGGTCAATGGTGATGTCTATGATGT
GTCGGAAGTACCAGAATTGTCCAAGAGTAAGGCTCATAATATTGAAGTCGTTGTCGATCGAATTGTGATAAAAGAAGGTA
TTCGCTCGCGACTTTTCGATTCAATCGAAGCGGCCCTGCGGATTGCGGACGGCTATGTCATCATTGATACCATGGATGAG
AAGGAACTGCTTTTCTCTGAGTACTATGCCTGTCCAGTATGTGGCTTTACAGTGCCTGAGTTGGAGCCTCGTCTTTTCTC
TTTCAATGCTCCTTTTGGGTCTTGTAGCGACTGTGATGGTTTGGGGATGAAGCTGGAAGTGGATACGGATTTGATTGTCC
CAGATGCCAGCAAGACCTTGCGTGAGGGTGCCTTAGCTCCGTGGAATCCTATTTCTTCTAACTACTATCCTCAGATGTTG
GAGCAAGCTATGAACCACTTTGGTGTGGACATGGACAAACCTTTCGAGGAATTGACGGAAGAGGAGAAGAACCTGATTTT
CAACGGTTCTGACGGGAAAGAATTCCATTTCCACTATGAAAATGAGTTCGGTGGGGTGCGTGATATTGACATTCCGTTTG
AAGGCTTGATTACCAACATTAACCGTCGCTACCGTGAAACCAATAGTGACTATACGCGGACGGTTATGAAGACTTACATG
AATGAGCTGACCTGTGGGACCTGCCACGGCTATCGCCTCAATGACCAAGCCCTGTCTGTCAAAGTTGGTGGCGAGCAGGG
ACTTCATATTGGACAATTATCAGACTTGTCCGTGGCGGATCATTTGCAAGTCATTGAACATCTGACCTTGTCTGAAAATG
AAGCGACGATTGCGACGCCCATTGTCAAGGAAATCAAGGATCGCCTGTCCTTCCTTAATAATGTAGGTCTCAACTACCTG
ACCCTTTCACGAGCAGCGGGGACGCTTTCTGGTGGTGAAAGCCAGCGGATTCGTCTGGCGACTCAGATTGGCTCGAACCT
GTCTGGTGTTCTTTACATCTTGGATGAGCCATCGATTGGTCTGCACCAGCGGGACAATGACCGCCTGATTGCCAGTCTCA
AAAAGATGCGGGACTTGGGCAATACCTTGATTGTGGTGGAGCATGACGAGGACACCATGCGGGAGGCGGACTGGTTGATT
GATATCGGTCCGGGTGCGGGTGTCTTCGGTGGAGAAATCGTGGCTTCTGGAACGCCTGTCCAAGTAGCTAAAAATAAAAA
ATCCATTACAGGCCAGTACCTATCTGGTAAACGTGAAATCCCAGTTCCTCTAGAACGCCGTGTTGGAAATGGTCGGTTCT
TAGAGGTAACAGGAGCCAAAGAAAACAACCTGCAAGATGTGACTGTTCGTTTCCCGCTCGGAAAATTTGTGGCGGTGACA
GGGGTGTCTGGCTCTGGTAAGTCAACTCTGGTCAATTCCATTCTGAAAAAAGCTATTGCTCAGAAACTCAATCGTAATTC
GGACAAGCCAGGCAAGTTCAAGTCCATTTCAGGAATTGAACACTTGGACCGCCTGATTGACATTGACCAAAGCCCGATTG
GACGGACACCGCGTTCCAACCCAGCTACCTACACAGGTGTTTTTGACGATATTCGGGATTTGTTTGCCCAGACCAATGAA
GCCAAAATCCGTGGCTACAAGAAGGGGCGTTTCTCCTTTAACGTCAAAGGTGGTCGTTGTGAAGCTTGTTCTGGTGACGG
GATTATCAAGATTGAAATGCACTTCCTGCCAGATGTCTTTGTACCTTGTGAAGTCTGTCATGGACACCGTTACAATTCTG
AAACCTTGGAAGTACACTACAAGGAGAAAAATATCGCCCAGGTCCTTGATATGACGGTCAATGATGCGGTGGAGTTCTTC
AAACATATTCCAAAAATCGAACGCAAGCTCCGCACCATTCAAGATGTGGGCTTGGGCTATGTTACTCTTGGACAACCTGC
AACAACCCTGTCAGGTGGGGAAGCCCAGCGGATGAAATTGGCATCTGAACTCCACAAGCGGTCGACTGGTAAGTCCCTCT
ATATCTTGGACGAGCCAACGACTGGCCTGCACACCGAGGACATTGCCCAGTTGCTCAAGGTCTTGGCCCGCTTTGTCGAT
GATGGCAACACTGTCCTTGTCATCGAACACAATCTAGATGTCATTAAGACGGCTGACCATATTATCGATATGGGGCCAGA
AGGCGGCGTCGGTGGTGGTACCGTTGTCGCGACAGGAACGCCAGAAGAAGTGGCGGATAACCCAGCCAGCTTTACAGGCC
AGTATTTGAAAACTAAGTTAAAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-238)

ABC transporter (ABC_tran)

(624-860)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

89.468

99.894

0.894
  uvrA Streptococcus pneumoniae TIGR4

89.468

99.894

0.894
  uvrA Streptococcus pneumoniae D39

89.468

99.894

0.894