Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   J1N58_RS07840 Genome accession   NZ_CP071697
Coordinates   1676434..1677030 (-) Length   198 a.a.
NCBI ID   WP_024386938.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1671434..1682030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS07810 (J1N58_07810) - 1671436..1672104 (-) 669 WP_105158084.1 ABC transporter ATP-binding protein -
  J1N58_RS07815 (J1N58_07815) - 1672114..1672413 (-) 300 WP_238142861.1 hypothetical protein -
  J1N58_RS07820 (J1N58_07820) - 1672457..1673578 (+) 1122 WP_061366882.1 IS110 family transposase -
  J1N58_RS07825 (J1N58_07825) - 1673952..1674797 (-) 846 WP_242696048.1 ABC transporter permease -
  J1N58_RS07830 (J1N58_07830) - 1674799..1675179 (-) 381 WP_207560250.1 OsmC family protein -
  J1N58_RS07835 (J1N58_07835) - 1675283..1676329 (-) 1047 WP_105158082.1 D-alanine--D-alanine ligase -
  J1N58_RS07840 (J1N58_07840) recR 1676434..1677030 (-) 597 WP_024386938.1 recombination mediator RecR Machinery gene
  J1N58_RS07845 (J1N58_07845) pbp2b 1677039..1679111 (-) 2073 WP_105158081.1 penicillin-binding protein PBP2B -
  J1N58_RS07850 (J1N58_07850) vga(F) 1679203..1680588 (-) 1386 WP_207560251.1 ABC-F type ribosomal protection protein Vga(F) -
  J1N58_RS07855 (J1N58_07855) vicX 1681119..1681922 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21679.77 Da        Isoelectric Point: 4.4757

>NTDB_id=478398 J1N58_RS07840 WP_024386938.1 1676434..1677030(-) (recR) [Streptococcus suis strain 1112S]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSVCGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=478398 J1N58_RS07840 WP_024386938.1 1676434..1677030(-) (recR) [Streptococcus suis strain 1112S]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAATTTGCTAAAAATTTATTGGCAGCTAAGCGAGACC
TATCTTATTGCTCCGTTTGTGGTAATCTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCTTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGTCCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGATA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485