Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H9Q14_RS11560 Genome accession   NZ_CP060794
Coordinates   2405549..2405944 (-) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain Z0118SE0260     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2400549..2410944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9Q14_RS11535 thiE 2401289..2401927 (-) 639 WP_002505076.1 thiamine phosphate synthase -
  H9Q14_RS11540 thiM 2401933..2402721 (-) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  H9Q14_RS11545 thiD 2402714..2403535 (-) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  H9Q14_RS11550 tenA 2403528..2404217 (-) 690 WP_001829894.1 thiaminase II -
  H9Q14_RS11555 - 2404502..2405161 (-) 660 WP_001829904.1 transglycosylase family protein -
  H9Q14_RS11560 ssb 2405549..2405944 (-) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  H9Q14_RS11565 - 2406135..2406575 (+) 441 WP_001829935.1 YwpF-like family protein -
  H9Q14_RS11570 fabZ 2406893..2407330 (-) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  H9Q14_RS11575 murA 2407364..2408629 (-) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  H9Q14_RS11580 - 2408739..2408972 (-) 234 WP_002456242.1 DUF1146 family protein -
  H9Q14_RS11585 - 2409121..2409525 (-) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=478393 H9Q14_RS11560 WP_002457121.1 2405549..2405944(-) (ssb) [Staphylococcus epidermidis strain Z0118SE0260]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=478393 H9Q14_RS11560 WP_002457121.1 2405549..2405944(-) (ssb) [Staphylococcus epidermidis strain Z0118SE0260]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733