Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   J1N58_RS06410 Genome accession   NZ_CP071697
Coordinates   1346358..1348127 (-) Length   589 a.a.
NCBI ID   WP_172043180.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1341358..1353127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS06390 (J1N58_06390) - 1343335..1343499 (-) 165 WP_002943677.1 hypothetical protein -
  J1N58_RS06395 (J1N58_06395) obgE 1343998..1345311 (-) 1314 WP_032497945.1 GTPase ObgE -
  J1N58_RS06400 (J1N58_06400) - 1345513..1345641 (-) 129 WP_002943675.1 DUF4044 domain-containing protein -
  J1N58_RS06405 (J1N58_06405) - 1345813..1346196 (-) 384 WP_174850523.1 hypothetical protein -
  J1N58_RS06410 (J1N58_06410) uvrC 1346358..1348127 (-) 1770 WP_172043180.1 excinuclease ABC subunit UvrC Machinery gene
  J1N58_RS06415 (J1N58_06415) - 1348329..1349072 (+) 744 WP_011922278.1 ABC transporter ATP-binding protein -
  J1N58_RS06420 (J1N58_06420) - 1349069..1350679 (+) 1611 WP_207560197.1 permease -
  J1N58_RS06425 (J1N58_06425) - 1350707..1351150 (-) 444 WP_032510741.1 VOC family protein -
  J1N58_RS06430 (J1N58_06430) ldcB 1351239..1351994 (-) 756 WP_029185363.1 LD-carboxypeptidase LdcB/DacB -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 67693.88 Da        Isoelectric Point: 9.1627

>NTDB_id=478388 J1N58_RS06410 WP_172043180.1 1346358..1348127(-) (uvrC) [Streptococcus suis strain 1112S]
MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLMITRQIKKDGGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLGQCLAHGENLPSLSDYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVLKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGTSPVSAMVV
FENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDGLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSI
GNIQSASLQEIAEAGVPYKVAELVKEKLK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=478388 J1N58_RS06410 WP_172043180.1 1346358..1348127(-) (uvrC) [Streptococcus suis strain 1112S]
ATGAACGATTTAATCAAGCATAAATTGGAGTTGCTGCCGGACAGCCCTGGCTGTTATCTCCATAAAAATAAGTATGGAAA
GATTATCTATGTGGGCAAGGCCAAAAACCTGCGTAATCGGGTGCGGTCATATTTTCGTGGTGCTCATGATACCAAGACAG
AGGCCTTGGTGTCAGAGATTGCGGACTTTGAATTCATCGTAACGGATTCTAATATCGAGGCACTCTTGTTGGAAATCAAT
CTGATTCAGGAAAACAAGCCTCGTTATAACATCATGCTCAAGGACGACAAGTCCTATCCCTTTATCAAGATTACCAAGGA
ACGCCATCCACGACTGATGATTACACGGCAGATAAAAAAGGATGGCGGTCAGTATTTTGGTCCCTATCCAGATGTGGGTG
CTGCCAACCAGACCCTCAAACTATTGGAGCGCCTCTATCCTTTCCGCAAGTGTAAATTGCCTGAGAACAAGTATTGTCTT
TATTATCATTTGGGGCAATGTCTGGCTCACGGGGAAAACCTGCCCAGCCTGTCTGACTATGACAAGATGGCCAAGGAAGT
TGCCCAGTTCTTGACAGGTCATGATGATAAGATTGTCAAGGAAGTTCAGGACAAGATGAAGGCGGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCGGAATACCGTGATGTCCTGCAATCCATCTCAACCCTACGGACCAAGCAACGTGTGATGGCTCAC
GACTTGCAAAATCGAGATGTCTTTGGTTACTACGTAGACAAGGGTTGGATGTGTGTGCAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGGAATGTCAATCTTTTTCCATACTATAATGATGCGGACGAAGATTTTTTGACCTACATCGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCCTCTGAAGTGTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTAGATACCAAGGTGCTTAAACCTCAGCGTGGTGAGAAGAAGCAACTTATCAATCTGGCGACCAAGAATGCGCGTGTCAG
TCTGGAGCAGAAGTTTAATCTTTTGGAGAAAAATCTGGAGAAGACCTACGGTGCGGTGGAGAATATCGGTCAGCTTTTGG
GGATTCCGACGCCTGTGCGGATTGAGGCCTTTGACAACTCCAACATTATGGGGACCAGTCCTGTATCGGCCATGGTGGTC
TTTGAAAATGGGGTGCCTAATAAAAAAGAATACCGCAAGTACAAGATTAAGACAGTGGAGGGACCGGATGACTATGCTTC
CATGCGAGAAGTGTTGCAACGGCGGTACAGTCGGGTGCTGCGGGACGGTTTGACACCGCCTGATTTGATTATCATTGACG
GTGGTCAGGGGCAGGTCAATGTCGCCAAGCAGGTCATCGAGCAGGAGTTGGGTATGTCCATTCCCATTGCAGGTTTGCAG
AAGAATGACAAGCACCAGACACACGAGTTGCTCTTTGGCAATCCGTTGGAAGTAGTGGAATTACCCCGTAATTCACAGGA
ATTTTTCCTCCTGCATCGGATACAAGATGAAGTGCACCGCTTTGCTATTGAGTTTCACCGTCAGGTACGCTCAAAAAATT
CCTTCTCATCTAAATTGGACGGCATAGAAGGCTTGGGACCAAAACGCAAGCAGGCTTTGATGAAGCATTTCAAGTCCATT
GGCAATATCCAGTCGGCCAGTCTACAAGAAATCGCAGAAGCAGGTGTGCCGTATAAGGTGGCGGAGTTGGTCAAGGAGAA
GTTGAAGTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(196-229)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

77.891

99.83

0.778
  uvrC Streptococcus pneumoniae R6

77.551

99.83

0.774
  uvrC Streptococcus pneumoniae D39

77.551

99.83

0.774