Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   J1N58_RS05685 Genome accession   NZ_CP071697
Coordinates   1185017..1185715 (+) Length   232 a.a.
NCBI ID   WP_044980470.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180017..1190715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS05655 (J1N58_05655) - 1180340..1181461 (-) 1122 WP_100881479.1 IS110 family transposase -
  J1N58_RS05660 (J1N58_05660) - 1181967..1182701 (-) 735 WP_044980473.1 ABC transporter permease -
  J1N58_RS05665 (J1N58_05665) - 1182698..1183453 (-) 756 WP_044675522.1 ABC transporter permease -
  J1N58_RS05670 (J1N58_05670) - 1183455..1184363 (-) 909 WP_136647906.1 ATP-binding cassette domain-containing protein -
  J1N58_RS05675 (J1N58_05675) - 1184417..1184581 (-) 165 WP_153598978.1 hypothetical protein -
  J1N58_RS05680 (J1N58_05680) - 1184644..1184814 (-) 171 WP_044980471.1 lacticin 481 family lantibiotic -
  J1N58_RS05685 (J1N58_05685) scnR 1185017..1185715 (+) 699 WP_044980470.1 response regulator transcription factor Regulator
  J1N58_RS05690 (J1N58_05690) - 1185726..1187096 (+) 1371 WP_136647907.1 HAMP domain-containing sensor histidine kinase -
  J1N58_RS05695 (J1N58_05695) - 1187188..1189053 (-) 1866 WP_136647908.1 SAG1250 family conjugative relaxase -
  J1N58_RS05700 (J1N58_05700) - 1189040..1189405 (-) 366 WP_024380649.1 plasmid mobilization relaxosome protein MobC -
  J1N58_RS05705 (J1N58_05705) - 1189415..1189774 (-) 360 WP_207560602.1 SAG1252 family conjugative relaxosome accessory protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26452.80 Da        Isoelectric Point: 5.4562

>NTDB_id=478381 J1N58_RS05685 WP_044980470.1 1185017..1185715(+) (scnR) [Streptococcus suis strain 1112S]
MDIETPFLTRKILVVDDDIALNNSIREILSVSGFKKIYSAYSISEGIESFINNSIDLIILDVMLPDGKGYLLSKYVRKNS
DIPILFLTAKNEPEDEIQGLQSGGDDFVTKPFLPKILIYRIISLLRRSYKEDSNIIKLENCIINLGNAIVEKNNEKLSLT
PIEIQIVRKLYDNKNYIVSTEAICDTVWGIDSFGYEKSLMVHIRNIREKIELNPSKPQYLITVKGLGYKLMV

Nucleotide


Download         Length: 699 bp        

>NTDB_id=478381 J1N58_RS05685 WP_044980470.1 1185017..1185715(+) (scnR) [Streptococcus suis strain 1112S]
ATGGATATAGAAACGCCTTTTTTAACTAGAAAAATATTGGTTGTTGATGATGATATTGCGTTAAACAATTCAATAAGGGA
GATACTATCAGTTTCTGGTTTCAAAAAAATATATAGTGCATACAGCATCAGTGAAGGAATAGAGTCTTTTATTAATAATT
CTATTGATTTGATTATATTAGATGTCATGCTTCCAGATGGGAAAGGATATTTACTATCAAAATACGTAAGAAAAAATTCT
GATATTCCAATTCTTTTTCTAACAGCAAAAAATGAACCTGAAGATGAAATTCAAGGGTTACAATCTGGAGGAGATGATTT
CGTGACTAAGCCTTTCCTTCCTAAAATTCTCATTTATCGCATAATTTCGCTTCTCCGTCGGTCGTACAAAGAAGACAGTA
ACATTATTAAATTAGAGAATTGCATTATTAATTTAGGAAATGCTATTGTTGAAAAAAATAATGAAAAACTTTCTTTAACC
CCAATAGAAATTCAAATCGTTCGGAAATTATATGATAATAAAAACTATATTGTATCTACAGAGGCGATTTGTGATACCGT
ATGGGGCATTGATAGTTTTGGATATGAAAAGTCTTTAATGGTCCATATCAGAAATATCAGAGAAAAAATCGAACTTAACC
CTTCAAAGCCACAATACTTAATTACTGTTAAAGGACTCGGCTATAAACTAATGGTATAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

43.946

96.121

0.422
  vicR Streptococcus mutans UA159

36.957

99.138

0.366