Detailed information
Bioinformatically predicted
Overview
| Name | dprA | Type | Machinery gene |
| Locus tag | H9Q14_RS07860 | Genome accession | NZ_CP060794 |
| Coordinates | 1621818..1622690 (+) | Length | 290 a.a. |
| NCBI ID | WP_001829468.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain Z0118SE0260 | ||
| Function | ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1589727..1631870 | 1621818..1622690 | within | 0 |
Gene organization within MGE regions
Location: 1589727..1631870
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9Q14_RS07720 | rsgA | 1590366..1591241 (+) | 876 | WP_002469378.1 | ribosome small subunit-dependent GTPase A | - |
| H9Q14_RS07725 | rpe | 1591242..1591886 (+) | 645 | WP_001830173.1 | ribulose-phosphate 3-epimerase | - |
| H9Q14_RS07730 | - | 1591891..1592526 (+) | 636 | WP_001830164.1 | thiamine diphosphokinase | - |
| H9Q14_RS07735 | rpmB | 1592609..1592797 (-) | 189 | WP_001830107.1 | 50S ribosomal protein L28 | - |
| H9Q14_RS07740 | - | 1593155..1593529 (+) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
| H9Q14_RS07745 | fakA | 1593544..1595202 (+) | 1659 | WP_145372672.1 | fatty acid kinase catalytic subunit FakA | - |
| H9Q14_RS07750 | recG | 1595406..1597454 (+) | 2049 | WP_002456579.1 | ATP-dependent DNA helicase RecG | - |
| H9Q14_RS07755 | fapR | 1597613..1598173 (+) | 561 | WP_001830099.1 | transcription factor FapR | - |
| H9Q14_RS07760 | plsX | 1598175..1599152 (+) | 978 | WP_002469384.1 | phosphate acyltransferase PlsX | - |
| H9Q14_RS07765 | fabD | 1599154..1600080 (+) | 927 | WP_002469385.1 | ACP S-malonyltransferase | - |
| H9Q14_RS07770 | fabG | 1600073..1600807 (+) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| H9Q14_RS07775 | - | 1601035..1601268 (+) | 234 | WP_001830184.1 | acyl carrier protein | - |
| H9Q14_RS07780 | rnc | 1601383..1602120 (+) | 738 | WP_002456575.1 | ribonuclease III | - |
| H9Q14_RS07785 | smc | 1602247..1605816 (+) | 3570 | WP_002497629.1 | chromosome segregation protein SMC | - |
| H9Q14_RS07790 | ftsY | 1605813..1607039 (+) | 1227 | WP_002456573.1 | signal recognition particle-docking protein FtsY | - |
| H9Q14_RS07795 | - | 1607041..1607373 (+) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| H9Q14_RS07800 | ffh | 1607404..1608771 (+) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| H9Q14_RS07805 | rpsP | 1609017..1609292 (+) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| H9Q14_RS07810 | rimM | 1609419..1609922 (+) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| H9Q14_RS07815 | trmD | 1609922..1610659 (+) | 738 | WP_001829466.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| H9Q14_RS07820 | rplS | 1610765..1611115 (+) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| H9Q14_RS07825 | - | 1611645..1614248 (-) | 2604 | WP_002456572.1 | YfhO family protein | - |
| H9Q14_RS07830 | - | 1614241..1616841 (-) | 2601 | WP_002456571.1 | YfhO family protein | - |
| H9Q14_RS07835 | - | 1617000..1617149 (+) | 150 | WP_162154119.1 | hypothetical protein | - |
| H9Q14_RS07840 | ylqF | 1617170..1618033 (+) | 864 | WP_001829495.1 | ribosome biogenesis GTPase YlqF | - |
| H9Q14_RS07845 | - | 1618038..1618808 (+) | 771 | WP_001829514.1 | ribonuclease HII | - |
| H9Q14_RS07850 | sucC | 1618916..1620082 (+) | 1167 | WP_002456569.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| H9Q14_RS07855 | sucD | 1620104..1621012 (+) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| H9Q14_RS07860 | dprA | 1621818..1622690 (+) | 873 | WP_001829468.1 | DNA-processing protein DprA | Machinery gene |
| H9Q14_RS07865 | topA | 1622873..1624942 (+) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| H9Q14_RS07870 | trmFO | 1624967..1626274 (+) | 1308 | WP_001832560.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| H9Q14_RS07875 | xerC | 1626528..1627388 (+) | 861 | WP_392392327.1 | tyrosine recombinase XerC | - |
| H9Q14_RS07880 | hslV | 1627392..1627934 (+) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| H9Q14_RS07885 | hslU | 1628003..1629406 (+) | 1404 | WP_002469380.1 | ATP-dependent protease ATPase subunit HslU | - |
| H9Q14_RS07890 | codY | 1629430..1630203 (+) | 774 | WP_002446289.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| H9Q14_RS07895 | rpsB | 1630562..1631350 (+) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 33726.62 Da Isoelectric Point: 9.3618
>NTDB_id=478375 H9Q14_RS07860 WP_001829468.1 1621818..1622690(+) (dprA) [Staphylococcus epidermidis strain Z0118SE0260]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF
Nucleotide
Download Length: 873 bp
>NTDB_id=478375 H9Q14_RS07860 WP_001829468.1 1621818..1622690(+) (dprA) [Staphylococcus epidermidis strain Z0118SE0260]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprA | Staphylococcus aureus N315 |
56.944 |
99.31 |
0.566 |
| dprA | Staphylococcus aureus MW2 |
56.944 |
99.31 |
0.566 |